Ss1.1-rsug27_o7.5
|
CCTCTTTCAGCTGAATGCATGCTGCAGTACAAGAAAAAAGCTGCTGCCTATATGAAGGCT
GTAAGAAAGCCCCTCTTGGAATCTGTGCCTTATGAAGAAGCATTGGCAAACCGCCGGGTC
CTTCTCAGCTCTACAGAAAGTCGAGAAGGCCTTGCACAACAGGTTCAGCAGAGTTTGGAG
AAGATCTCTAAATTAGAGCAGGAAAAGGAACATTGGATGTTGGAAGCACAGTTAGCTAAA
ATCAAGCTGGAGAAAGAAAACCAGCGAATTGCAGATAAACTGAAGAGTACAAGTAGTGCG
CAGGTAGTCGGGCTGGCCCAGGAAAGCGCTGCTGTGGTGACTGCTTCAGGCCAGGAGGAA
GCATCAGCTAAGGCTCTGCTGGAGCCCATTCACAGCACTAGTCTGATTGGGATTTTAACC
AGGACATCCGACAGTGAGGTTCTGGATGTGGAATCTCGTGAAGACTTAATTAAAAATCAC
TACATGGCAAGGATAGTGGAACTGACATCTCAGCTACAGCTGGCTGACAGTAAGTCAGTG
CATTTTTATGCTGAGTGCCGGGCACTCTCTAAAAGACTGGCCTTGGCTGAAAAGTCTAAG
GAGGCACTGACAGAAGAGATGAAAGTAGCCAGTCAGAACATCAGCCGACTTCAGGATGAG
CTGACAACCACCAAGAGGAGTTATGAGGATCAGTTAAGTATGATGAGTGACCACCTGTGC
AGCATGAATGAGACATTGTCTAAACAGAGAGAAGAGATTGACACACTAAAGATGTCCAGT
AAGGGAAATTCTAAAAAGAACAAGAGTCGATAGTTTACAGGTGTCTGGTTGGTGACTTCT
TTCCAGAGCTGCTACTGCTGTGCGGAGCTGCAGGGCCGAGACTCCACGTCCAGTGCTGGC
CGCCTTCAGGAAGCTGGAGTGTTGTTGGACCTAGTAAAGTAGTCAGTGTTGTAAATGGCC
TTGAAATATTTAAAATATATTTGTAACCAGTAAGGCAAATATAGAATTTGATGTTGACAG
TAAAATGGAAAACAATACACTTACCATGGATATTGTAGGTTTCCTTACGCTGTTTTTACT
GTACACTTTTTAAAATTAGGTTTTAATTTCAGTATGTAAGAACAACAAATATTTTGTATA
TTTTCAAACGCAATTATATGGTTATCAATTTGGTATCAATGGAATAGATATATGTTTCTG
GATAAAGTGCTTAAATTGTCAAACTGTCATTACTTCTTGCTATAATTGAAAGCAGTCTCC
AATTCTTTTTGAAGACTTACTCATCTCTCTCTCTCTGAAGGGAGTAGGCCTTGCAAACTT
CAGATCTTGTGGGTTTATTATCATTGTCTTCAGCTCTTCAGTACCTTCTCTGTGTTGGAA
TAATAGCTTAAGGAAATTGATGTCAATAAATTCATACTTATATCAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTCTTTCAGCTGAATGCATGCTGCAGTACAAGAAAAAAGCTGCTGCCTATATGAAGGCT
GTAAGAAAGCCCCTCTTGGAATCTGTGCCTTATGAAGAAGCATTGGCAAACCGCCGGGTC
CTTCTCAGCTCTACAGAAAGTCGAGAAGGCCTTGCACAACAGGTTCAGCAGAGTTTGGAG
AAGATCTCTAAATTAGAGCAGGAAAAGGAACATTGGATGTTGGAAGCACAGTTAGCTAAA
ATCAAGCTGGAGAAAGAAAACCAGCGAATTGCAGATAAACTGAAGAGTACAAGTAGTGCG
CAGGTAGTCGGGCTGGCCCAGGAAAGCGCTGCTGTGGTGACTGCTTCAGGCCAGGAGGAA
GCATCAGCTAAGGCTCTGCTGGAGCCCATTCACAGCACTAGTCTGATTGGGATTTTAACC
AGGACATCCGACAGTGAGGTTCTGGATGTGGAATCTCGTGAAGACTTAATTAAAAATCAC
TACATGGCAAGGATAGTGGAACTGACATCTCAGCTACAGCTGGCTGACAGTAAGTCAGTG
CATTTTTATGCTGAGTGCCGGGCACTCTCTAAAAGACTGGCCTTGGCTGAAAAGTCTAAG
GAGGCACTGACAGAAGAGATGAAAGTAGCCAGTCAGAACATCAGCCGACTTCAGGATGAG
CTGACAACCACCAAGAGGAGTTATGAGGATCAGTTAAGTATGATGAGTGACCACCTGTGC
AGCATGAATGAGACATTGTCTAAACAGAGAGAAGAGATTGACACACTAAAGATGTCCAGT
AAGGGAAATTCTAAAAAGAACAAGAGTCGATAGTTTACAGGTGTCTGGTTGGTGACTTCT
TTCCAGAGCTGCTACTGCTGTGCGGAGCTGCAGGGCCGAGACTCCACGTCCAGTGCTGGC
CGCCTTCAGGAAGCTGGAGTGTTGTTGGACCTAGTAAAGTAGTCAGTGTTGTAAATGGCC
TTGAAATATTTAAAATATATTTGTAACCAGTAAGGCAAATATAGAATTTGATGTTGACAG
TAAAATGGAAAACAATACACTTACCATGGATATTGTAGGTTTCCTTACGCTGTTTTTACT
GTACACTTTTTAAAATTAGGTTTTAATTTCAGTATGTAAGAACAACAAATATTTTGTATA
TTTTCAAACGCAATTATATGGTTATCAATTTGGTATCAATGGAATAGATATATGTTTCTG
GATAAAGTGCTTAAATTGTCAAACTGTCATTACTTCTTGCTATAATTGAAAGCAGTCTCC
AATTCTTTTTGAAGACTTACTCATCTCTCTCTCTCTGAAGGGAGTAGGCCTTGCAAACTT
CAGATCTTGTGGGTTTATTATCATTGTCTTCAGCTCTTCAGTACCTTCTCTGTGTTGGAA
TAATAGCTTAAGGAAATTGATGTCAATAAATTCATACTTATATCAAAAAAAAAAAAAAAA |
|
gi|61849436|ref|XP_590582.1| |
Protein identifier
|
gi|61849436|ref|XP_590582.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
161-402, gnl|bosTau2|chr12 (12353357-12353116) |
|
161-402, gnl|canFam2|chr10 (53526138-53526420) |
|
161-402, gnl|dasNov1|scaffold_14518 (11-297) |
|
161-402, gnl|echTel1|scaffold_294444 (35473-35764) |
|
161-402, gnl|fr1|chrUn (25083512-25083225) |
|
161-402, gnl|galGal2|chr3 (8209752-8209474) |
|
161-402, gnl|hg17|chr2 (48637258-48637545) |
|
161-402, gnl|Hg17|chr2 (48637281-48637522) |
|
161-402, gnl|mm7|chr17 (86883828-86884107) |
|
161-402, gnl|Mm7|chr17 (86883845-86884086) |
|
161-402, gnl|monDom2|scaffold_1 (8757377-8757669) |
|
161-402, gnl|oryCun1|scaffold_200566 (12877-13164) |
|
161-402, gnl|panTro1|chr12 (50711931-50712218) |
|
161-402, gnl|rheMac2|chr13 (48682621-48682906) |
|
161-402, gnl|rn3|chr6 (12389712-12389993) |
|
161-402, gnl|tetNig1|chr17 (3393136-3393398) |
|
161-402, gnl|xenTro1|scaffold_111 (524621-524881) |
| |
|
554-660, gnl|bosTau2|chr12 (12347350-12347245) |
|
554-660, gnl|Hg17|chr2 (48648803-48648908) |
|
554-660, gnl|Mm7|chr17 (86889122-86889227) |
| |
|
782-1427, gnl|bosTau2|chr12 (12343650-12342992) |
|
782-1427, gnl|Hg17|chr2 (48653503-48654176) |
|
782-1427, gnl|Mm7|chr17 (86894391-86895077) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
161-402, gnl|bosTau2|chr12 (12353357-12353116) |
|
161-402, gnl|canFam2|chr10 (53526138-53526420) |
|
161-402, gnl|dasNov1|scaffold_14518 (11-297) |
|
161-402, gnl|echTel1|scaffold_294444 (35473-35764) |
|
161-402, gnl|fr1|chrUn (25083512-25083225) |
|
161-402, gnl|galGal2|chr3 (8209752-8209474) |
|
161-402, gnl|hg17|chr2 (48637258-48637545) |
|
161-402, gnl|Hg17|chr2 (48637281-48637522) |
|
161-402, gnl|mm7|chr17 (86883828-86884107) |
|
161-402, gnl|Mm7|chr17 (86883845-86884086) |
|
161-402, gnl|monDom2|scaffold_1 (8757377-8757669) |
|
161-402, gnl|oryCun1|scaffold_200566 (12877-13164) |
|
161-402, gnl|panTro1|chr12 (50711931-50712218) |
|
161-402, gnl|rheMac2|chr13 (48682621-48682906) |
|
161-402, gnl|rn3|chr6 (12389712-12389993) |
|
161-402, gnl|tetNig1|chr17 (3393136-3393398) |
|
161-402, gnl|xenTro1|scaffold_111 (524621-524881) |
| |
|
554-660, gnl|bosTau2|chr12 (12347350-12347245) |
|
554-660, gnl|Hg17|chr2 (48648803-48648908) |
|
554-660, gnl|Mm7|chr17 (86889122-86889227) |
| |
|
782-1427, gnl|bosTau2|chr12 (12343650-12342992) |
|
782-1427, gnl|Hg17|chr2 (48653503-48654176) |
|
782-1427, gnl|Mm7|chr17 (86894391-86895077) |
|
sug (0.509165) |
|
cbe (0.478469) |
|
elu (0.385356) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ece (0.229305) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
fco (0.157208) |
|
eli (0.151814) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
kid (0.129735) |
|
spc (0.113366) |
|
sug (0.509165) |
|
cbe (0.478469) |
|
elu (0.385356) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ece (0.229305) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
mga (0.160205) |
|
fco (0.157208) |
|
eli (0.151814) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
kid (0.129735) |
|
spc (0.113366) |
