Non-Coding RNA Search

Ss1.1-rsug28_d20.5

Sequence:


               
               ACCTTTCTCTAGGGACGAGTGTTCCCAGTGCACCTAATATTACTGAGCATACAACTAAAC
ATTGGTTCATAGTTTCCAAGCCACTCCTGAGGGACAGACTTATTCATATTTATATATTTA
GAAACGAGTATGGTGCGTGGCGCATTACGGCACCTCAGAATATGTTCATGGTTGGGTTGG
GTGTGTATCTGTTAGCTAGGAAAAGAGTACATCTGTAATTTATACTTGGGTCCCTTTCCG
GCCAGTGGCCCACTAGTGCTGGGCTAAGTACTCCCAAGTAGTTGAGGAGCACTGTGAAAG
TGGAGGATGGGGAGGTGCAGCCCTGGCACCAAAGGCGAGCAGTTGGATGATTCTGATCCC
TCTGGTTTGTTACAGTGAACCGGCTGGGGTAAATACATAGGGCATACACTTATTTTAATA
TGCTATGAATTATAAAGAATTTGTCTAGCAGGAAACAATTGTACAGGTACGTCACAGGAG
TTTGAAGTTCTTACTTATAAAAATCTACGAGTATTGTTTTGTGGGAAGCCTGAAAATGGG
AAAAGCACCAAACCAGAAATCAGAACGCATGAGTTCTAGGCACAAAGGGCCATTCCATCA
GTTTTTGTTTTTGTTTTGGACAAATGGTATCAGAGGTTTCTTTTAGCTCTAACATTCTAT
TTTATAACTCTGGTTGGTAGTTGTGCAGTGTCATGTGATCTATAGAAAAAAATGAGAAAT
TGAGACTGGTGGAATTCTGTATCAGGATACCTGAGATGCACTTTAAATTGTGGAAATGTA
AGCTCCTTGAGGGCAGGGACCACACCTTATTTACTGTTAGAGTCCCTTGCATCTAGTATG
GTGCACCGGGCACATACTAGGCACTCAATAAATATTTACCGATGAAAACAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTTCTCTAGGGACGAGTGTTCCCAGTGCACCTAATATTACTGAGCATACAACTAAAC
ATTGGTTCATAGTTTCCAAGCCACTCCTGAGGGACAGACTTATTCATATTTATATATTTA
GAAACGAGTATGGTGCGTGGCGCATTACGGCACCTCAGAATATGTTCATGGTTGGGTTGG
GTGTGTATCTGTTAGCTAGGAAAAGAGTACATCTGTAATTTATACTTGGGTCCCTTTCCG
GCCAGTGGCCCACTAGTGCTGGGCTAAGTACTCCCAAGTAGTTGAGGAGCACTGTGAAAG
TGGAGGATGGGGAGGTGCAGCCCTGGCACCAAAGGCGAGCAGTTGGATGATTCTGATCCC
TCTGGTTTGTTACAGTGAACCGGCTGGGGTAAATACATAGGGCATACACTTATTTTAATA
TGCTATGAATTATAAAGAATTTGTCTAGCAGGAAACAATTGTACAGGTACGTCACAGGAG
TTTGAAGTTCTTACTTATAAAAATCTACGAGTATTGTTTTGTGGGAAGCCTGAAAATGGG
AAAAGCACCAAACCAGAAATCAGAACGCATGAGTTCTAGGCACAAAGGGCCATTCCATCA
GTTTTTGTTTTTGTTTTGGACAAATGGTATCAGAGGTTTCTTTTAGCTCTAACATTCTAT
TTTATAACTCTGGTTGGTAGTTGTGCAGTGTCATGTGATCTATAGAAAAAAATGAGAAAT
TGAGACTGGTGGAATTCTGTATCAGGATACCTGAGATGCACTTTAAATTGTGGAAATGTA
AGCTCCTTGAGGGCAGGGACCACACCTTATTTACTGTTAGAGTCCCTTGCATCTAGTATG
GTGCACCGGGCACATACTAGGCACTCAATAAATATTTACCGATGAAAACAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               2-336, gnl|bosTau2|chr5 (41660887-41661245)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-336, gnl|bosTau2|chr5 (41660887-41661245)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	cbe (0.478469)
	sug (0.381874)
	bla (0.373042)
	tra (0.246184)
	spc (0.226732)
	aor (0.195274)
	cmu (0.186393)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	lnt (0.142308)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	eru (0.120048)
	ecc (0.115035)