Non-Coding RNA Search

Ss1.1-rsug28_n14.5

Sequence:


               
               AAAGGGAAATGATTTCTCCTAGGAAAACTTAGTTCTGACTGCTAGATTTTTGCGGCCTTT
CTTTGTGCCATTGTAGATGCAAAACAAATCATGGAAGATTGCATACTTGTGTGGTACTTT
TTTAATAACTCTCCCTCCCCGCCCCCAATCTTTTGAGAACAGTGTAGGCTGAATGGTAAA
ACATAACAATTTACTCTGGGGGAACAGAACCTCTTTTCATCTCAAGCTAGATTCTCTTGA
TTCTTTTAGACATCATAGCTCGCAAGTTCTGTTCCTGTCACCCTAACTTGGCATGAGTGG
GTTGAGTTAATCCTTTAATACTGCAGTGTTCTGAGCATGGCTGAAGCATTAAAAACTTAA
GTATATAATGTTTAGTATTTTATAGAGCAAAATTAATGGAAAGCATTTGGCTGAATCTAA
AGACCTGCAGTCAAATTCTTCAATGTGGTTTACCCAACTGGAGTAGTGGTACACACCTTA
AATCATTCAATGAATAAATAATTTAAAAAACCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGGAAATGATTTCTCCTAGGAAAACTTAGTTCTGACTGCTAGATTTTTGCGGCCTTT
CTTTGTGCCATTGTAGATGCAAAACAAATCATGGAAGATTGCATACTTGTGTGGTACTTT
TTTAATAACTCTCCCTCCCCGCCCCCAATCTTTTGAGAACAGTGTAGGCTGAATGGTAAA
ACATAACAATTTACTCTGGGGGAACAGAACCTCTTTTCATCTCAAGCTAGATTCTCTTGA
TTCTTTTAGACATCATAGCTCGCAAGTTCTGTTCCTGTCACCCTAACTTGGCATGAGTGG
GTTGAGTTAATCCTTTAATACTGCAGTGTTCTGAGCATGGCTGAAGCATTAAAAACTTAA
GTATATAATGTTTAGTATTTTATAGAGCAAAATTAATGGAAAGCATTTGGCTGAATCTAA
AGACCTGCAGTCAAATTCTTCAATGTGGTTTACCCAACTGGAGTAGTGGTACACACCTTA
AATCATTCAATGAATAAATAATTTAAAAAACCAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-518, gnl|bosTau2|chr25 (8030202-8029692)
               

               
               1-518, gnl|Hg17|chr16 (9120574-9121053)
               

               
               1-518, gnl|Mm7|chr16 (8530718-8531299)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr25 (8030202-8029692)
               

               
               1-518, gnl|Hg17|chr16 (9120574-9121053)
               

               
               1-518, gnl|Mm7|chr16 (8530718-8531299)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hlv (0.278513)
               

               
               fty (0.17584)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               fty (0.17584)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	1-518, gnl\|bosTau2\|chr25 (8030202-8029692)
	1-518, gnl\|Hg17\|chr16 (9120574-9121053)
	1-518, gnl\|Mm7\|chr16 (8530718-8531299)