Ss1.1-rsug28_p17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAAAAGATGTTAATATCCAAGCTAGAAAAAAACAAAAACATGAAACCAGAAGAGAGAG CAAATATAATGAAGACTTTAAAAGAGCTTGGAGAAAAGATCTCACAATTGAAAGATGAGT TAAAGACATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAAA AAGAACTGTTAGATACTGAACTGGACCTTCACAAGAGACTGTCTTCAGGAGAAGACACAA CAGAGTTACGGAAGAAACTGAGTCAGTTACAGGTTGAGGCTGCACGATTAGGTATTTTAC CTGTGGGTCGAGGAAAGACCATGTCCTCTCAAGGTCGAGGCCGAGGCCGAGGCCGTGGAG GAAGAGGCCGGGGCTCACTGAGTCACATGGTGGTGGACCACCGCCCCAAAGCACTGACAG TTGGGGGGTTCATTGAGGAGGAAAAGGATGACTTACTTCAGCACTTTTCACCTGCAAATC AAGGGTCAAAATTCAAAGACCGTCGGCTACAAATATCATGGCACAAGGCCAAGGTGCCTT CTGTATCCACTGAGACTGAGGAAGAAGAAGTCAAGGAGGAGGAGACGGAAACCTCAGATT TGTTTTTGCATGATGATGACGATGAAGACGAAGATGAATATGAGTCTCGTTCTTGGCGAA GATGAGATCTGATGTGAGCTGTATAATTTTTAGGAATATTGTTTAGAAGAACAACTTTTT AAAATTATTTAAAGAAGTCAATGAGCCAAAAAATTTTTTTTTATTTTTCTTTTCAACACA GTAGGTGTAAGGACAGCAAGTGTGCTCTTTAAATACATCTCATAACTGTTCATGATACTA AAAAGCGCCAAAGGCCTAGTGACTGTAACACAGTTGTGAAGATCCACAGGAATGACATGG GTAATCTCTAGAGCCTTATTTTCCACACCACCTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAAAAGATGTTAATATCCAAGCTAGAAAAAAACAAAAACATGAAACCAGAAGAGAGAG CAAATATAATGAAGACTTTAAAAGAGCTTGGAGAAAAGATCTCACAATTGAAAGATGAGT TAAAGACATCTTCTGCAGTCTCCACACCATCTAAAGTAAAGACAAAAACAGAGGCCCAAA AAGAACTGTTAGATACTGAACTGGACCTTCACAAGAGACTGTCTTCAGGAGAAGACACAA CAGAGTTACGGAAGAAACTGAGTCAGTTACAGGTTGAGGCTGCACGATTAGGTATTTTAC CTGTGGGTCGAGGAAAGACCATGTCCTCTCAAGGTCGAGGCCGAGGCCGAGGCCGTGGAG GAAGAGGCCGGGGCTCACTGAGTCACATGGTGGTGGACCACCGCCCCAAAGCACTGACAG TTGGGGGGTTCATTGAGGAGGAAAAGGATGACTTACTTCAGCACTTTTCACCTGCAAATC AAGGGTCAAAATTCAAAGACCGTCGGCTACAAATATCATGGCACAAGGCCAAGGTGCCTT CTGTATCCACTGAGACTGAGGAAGAAGAAGTCAAGGAGGAGGAGACGGAAACCTCAGATT TGTTTTTGCATGATGATGACGATGAAGACGAAGATGAATATGAGTCTCGTTCTTGGCGAA GATGAGATCTGATGTGAGCTGTATAATTTTTAGGAATATTGTTTAGAAGAACAACTTTTT AAAATTATTTAAAGAAGTCAATGAGCCAAAAAATTTTTTTTTATTTTTCTTTTCAACACA GTAGGTGTAAGGACAGCAAGTGTGCTCTTTAAATACATCTCATAACTGTTCATGATACTA AAAAGCGCCAAAGGCCTAGTGACTGTAACACAGTTGTGAAGATCCACAGGAATGACATGG GTAATCTCTAGAGCCTTATTTTCCACACCACCTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 46-174, - strand, RNAz p=0.980319 | |
| 55-174, - strand, RNAz p=0.979353 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-174, - strand, RNAz p=0.980319 | |
| 55-174, - strand, RNAz p=0.979353 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 7-174, gnl|bosTau2|chr18 (53072708-53072875) | |
| 7-174, gnl|canFam2|chr2 (43539318-43539445) | |
| 7-174, gnl|danRer3|chrUn (111359889-111359762) | |
| 7-174, gnl|dasNov1|scaffold_170024 (1676-1548) | |
| 7-174, gnl|echTel1|scaffold_261347 (613-486) | |
| 7-174, gnl|fr1|chrUn (264072984-264073111) | |
| 7-174, gnl|galGal2|chr13 (16856108-16856235) | |
| 7-174, gnl|hg17|chr5 (145629165-145629292) | |
| 7-174, gnl|Hg17|chr5 (145629174-145629341) | |
| 7-174, gnl|loxAfr1|scaffold_1700 (54902-55033) | |
| 7-174, gnl|mm7|chr18 (42705256-42705383) | |
| 7-174, gnl|Mm7|chr18 (42705265-42705432) | |
| 7-174, gnl|monDom2|scaffold_6 (60107692-60107567) | |
| 7-174, gnl|oryCun1|scaffold_166695 (14014-13885) | |
| 7-174, gnl|panTro1|chr4 (152345063-152345190) | |
| 7-174, gnl|rheMac2|chr6 (142723260-142723387) | |
| 7-174, gnl|rn3|chr18 (35559421-35559548) | |
| 7-174, gnl|tetNig1|chr7 (9276923-9277048) | |
| 7-174, gnl|xenTro1|scaffold_306 (1160845-1160968) | |
| 274-470, gnl|bosTau2|chr18 (53074653-53074849) | |
| 274-470, gnl|Hg17|chr5 (145631234-145631430) | |
| 274-470, gnl|Mm7|chr18 (42711117-42711310) | |
| 580-936, gnl|bosTau2|chr18 (53081464-53081824) | |
| 580-936, gnl|Hg17|chr5 (145645701-145646056) | |
| 580-936, gnl|Mm7|chr18 (42716303-42716642) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-174, gnl|bosTau2|chr18 (53072708-53072875) | |
| 7-174, gnl|canFam2|chr2 (43539318-43539445) | |
| 7-174, gnl|danRer3|chrUn (111359889-111359762) | |
| 7-174, gnl|dasNov1|scaffold_170024 (1676-1548) | |
| 7-174, gnl|echTel1|scaffold_261347 (613-486) | |
| 7-174, gnl|fr1|chrUn (264072984-264073111) | |
| 7-174, gnl|galGal2|chr13 (16856108-16856235) | |
| 7-174, gnl|hg17|chr5 (145629165-145629292) | |
| 7-174, gnl|Hg17|chr5 (145629174-145629341) | |
| 7-174, gnl|loxAfr1|scaffold_1700 (54902-55033) | |
| 7-174, gnl|mm7|chr18 (42705256-42705383) | |
| 7-174, gnl|Mm7|chr18 (42705265-42705432) | |
| 7-174, gnl|monDom2|scaffold_6 (60107692-60107567) | |
| 7-174, gnl|oryCun1|scaffold_166695 (14014-13885) | |
| 7-174, gnl|panTro1|chr4 (152345063-152345190) | |
| 7-174, gnl|rheMac2|chr6 (142723260-142723387) | |
| 7-174, gnl|rn3|chr18 (35559421-35559548) | |
| 7-174, gnl|tetNig1|chr7 (9276923-9277048) | |
| 7-174, gnl|xenTro1|scaffold_306 (1160845-1160968) | |
| 274-470, gnl|bosTau2|chr18 (53074653-53074849) | |
| 274-470, gnl|Hg17|chr5 (145631234-145631430) | |
| 274-470, gnl|Mm7|chr18 (42711117-42711310) | |
| 580-936, gnl|bosTau2|chr18 (53081464-53081824) | |
| 580-936, gnl|Hg17|chr5 (145645701-145646056) | |
| 580-936, gnl|Mm7|chr18 (42716303-42716642) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) |