Ss1.1-rsug29_b20.5
|
CTGGGCATCAGCGGTACCGTGCGCGTGCGCAACGTGGCCTTCGAGAAGCAGGTGGCCGTG
CGCTACACCTTCTCGGACTGGCAGAGTGCGCACGAGGCGGGGGCGAGGTGGCGCGGGCCG
GCGGGCGCTGAGGGCGCCGAGGACGTCTTCGCCTTCGGCTTCCCGGTCCCACCCTTCCTG
CTAGCGCTCGGCTCCCGCGTGCACTTCGCGCTGCGCTACCGCGTGGCGGGCGCCGAGTAC
TGGGACAACAACGACGGCCGAGACTACAGCCTCACGTGCCGAAACCACGCCCTGCACATG
CCACGCGGGGAGTGCGAGGAGAGCTGGATCCACTTCATCTGAGCCTCCGCGCGCAGGCCG
CCCCGGCGGGCACTTCCTAGCAGCACGCTGGCATCCGGGTGGTGCTCCTCCCTCACACCC
CTTCCCCAACCCGAGCTCCTGGAAGCTCACTTCCCGCTGCAAGGTGTGCTGGCAGTGGCC
TGTCCTGTCCCACCTGCAACGTTTATGGTCTAAAAAGTAGCCTCAGGTTCCAGAAGGCCG
AGCCTGTGCTGGGGTGGGGTGCTGGGTGAGTAGATGCATGGGTGCGTCGGCCCATCCCAG
GGTGTTCTTGGAAAGGCCTGCGTCTCCCCGCTGGGAAAGCCTGTGGCTTTTGCATGTGTC
CTAATTGGATCTCCGTGAATGCAGCTACTGTTATCATTGTGATGCTGGGACCTTTTACCT
GAGTGGATGCCTTCTCGGGAATATTCTGGATTTAGTAAGCTAAGAAAACGTCCGGTTGTG
TGTTTGTGCTCACTGTAAACAGCATGCACAGTGTGACCCCATCGTGGTCCCTCAAGGCAT
TCCCGACCCGGGACACGGAAAACCCGAGATCACATTTGCTTGCCAATATCTGTAGGCTTC
TAACAGCCGGGAAACTATTAATAGGCAAGAAATTTATGCTTCATCCGTCATCATACAACC
ATTCCTGGGAGTTCAGGCTGCCCTGGTTAGGCTGTGTGTCTCCTACACCAGCAGCCGAGA
AGAAGGAACATGTTTAAAACTTGTAACTAGCAAGATATCCCTTCTGCAGTCTCTCCTCTC
ACTTAATGTATTTTTTCTTGTTATGTGTTTGATAATTATGATCTGCACTTTATCAGGCCA
TTCTGTATAGGTTTGAACTACCTACACATTTAAAGAAATTCTGCCTTAAGTTATTTCAAT
TTTTAGGCAACTCTGTAGAATTTCAGGCAAGGATGCCCTTTGCAATTACCTTTTTGATGA
TAAAAGGTGACTCTGTTTATGTCTTCTTAAGTGTCAAAGGTTCCAGCAGTCATCTTTCAG
AAGACACGTTACCGAGTGGAACTAGCAGGTATTTTCAGCAATAGACAGAGCACTGGAGGA
AAAACAATACACAAATATTTATGCTTTTTAATCATTTTAAATTAGATTTGTATGTGCCTG
GTTTTACCAGCTACCTGCCAACTGTATTCTTTGTGCCTTCAGATAGAAAATTTTATTACA
TTATCTGAACTTGTTTCCCAGTTTTAAAACATTAAATGCTTTTTGTAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGGGCATCAGCGGTACCGTGCGCGTGCGCAACGTGGCCTTCGAGAAGCAGGTGGCCGTG
CGCTACACCTTCTCGGACTGGCAGAGTGCGCACGAGGCGGGGGCGAGGTGGCGCGGGCCG
GCGGGCGCTGAGGGCGCCGAGGACGTCTTCGCCTTCGGCTTCCCGGTCCCACCCTTCCTG
CTAGCGCTCGGCTCCCGCGTGCACTTCGCGCTGCGCTACCGCGTGGCGGGCGCCGAGTAC
TGGGACAACAACGACGGCCGAGACTACAGCCTCACGTGCCGAAACCACGCCCTGCACATG
CCACGCGGGGAGTGCGAGGAGAGCTGGATCCACTTCATCTGAGCCTCCGCGCGCAGGCCG
CCCCGGCGGGCACTTCCTAGCAGCACGCTGGCATCCGGGTGGTGCTCCTCCCTCACACCC
CTTCCCCAACCCGAGCTCCTGGAAGCTCACTTCCCGCTGCAAGGTGTGCTGGCAGTGGCC
TGTCCTGTCCCACCTGCAACGTTTATGGTCTAAAAAGTAGCCTCAGGTTCCAGAAGGCCG
AGCCTGTGCTGGGGTGGGGTGCTGGGTGAGTAGATGCATGGGTGCGTCGGCCCATCCCAG
GGTGTTCTTGGAAAGGCCTGCGTCTCCCCGCTGGGAAAGCCTGTGGCTTTTGCATGTGTC
CTAATTGGATCTCCGTGAATGCAGCTACTGTTATCATTGTGATGCTGGGACCTTTTACCT
GAGTGGATGCCTTCTCGGGAATATTCTGGATTTAGTAAGCTAAGAAAACGTCCGGTTGTG
TGTTTGTGCTCACTGTAAACAGCATGCACAGTGTGACCCCATCGTGGTCCCTCAAGGCAT
TCCCGACCCGGGACACGGAAAACCCGAGATCACATTTGCTTGCCAATATCTGTAGGCTTC
TAACAGCCGGGAAACTATTAATAGGCAAGAAATTTATGCTTCATCCGTCATCATACAACC
ATTCCTGGGAGTTCAGGCTGCCCTGGTTAGGCTGTGTGTCTCCTACACCAGCAGCCGAGA
AGAAGGAACATGTTTAAAACTTGTAACTAGCAAGATATCCCTTCTGCAGTCTCTCCTCTC
ACTTAATGTATTTTTTCTTGTTATGTGTTTGATAATTATGATCTGCACTTTATCAGGCCA
TTCTGTATAGGTTTGAACTACCTACACATTTAAAGAAATTCTGCCTTAAGTTATTTCAAT
TTTTAGGCAACTCTGTAGAATTTCAGGCAAGGATGCCCTTTGCAATTACCTTTTTGATGA
TAAAAGGTGACTCTGTTTATGTCTTCTTAAGTGTCAAAGGTTCCAGCAGTCATCTTTCAG
AAGACACGTTACCGAGTGGAACTAGCAGGTATTTTCAGCAATAGACAGAGCACTGGAGGA
AAAACAATACACAAATATTTATGCTTTTTAATCATTTTAAATTAGATTTGTATGTGCCTG
GTTTTACCAGCTACCTGCCAACTGTATTCTTTGTGCCTTCAGATAGAAAATTTTATTACA
TTATCTGAACTTGTTTCCCAGTTTTAAAACATTAAATGCTTTTTGTAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-353, gnl|bosTau2|chr13 (38678980-38678628) |
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1-353, gnl|Hg17|chr20 (57947823-57947417) |
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1-353, gnl|Mm7|chr2 (178914622-178914278) |
| |
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372-1544, gnl|bosTau2|chr13 (38678638-38677431) |
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372-1544, gnl|canFam2|chr24 (47528659-47529872) |
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372-1544, gnl|dasNov1|scaffold_6401 (8408-7301) |
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372-1544, gnl|hg17|chr20 (57946087-57947210) |
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372-1544, gnl|Hg17|chr20 (57947481-57946276) |
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372-1544, gnl|loxAfr1|scaffold_32264 (36102-34945) |
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372-1544, gnl|mm7|chr2 (178912942-178914041) |
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372-1544, gnl|Mm7|chr2 (178914280-178913108) |
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372-1544, gnl|monDom2|scaffold_1 (174889480-174890641) |
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372-1544, gnl|oryCun1|scaffold_150804 (60364-59324) |
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372-1544, gnl|panTro1|chr21 (60948035-60949154) |
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372-1544, gnl|rheMac2|chr10 (4600967-4599849) |
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372-1544, gnl|rn3|chr3 (167412326-167413431) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-353, gnl|bosTau2|chr13 (38678980-38678628) |
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1-353, gnl|Hg17|chr20 (57947823-57947417) |
|
1-353, gnl|Mm7|chr2 (178914622-178914278) |
| |
|
372-1544, gnl|bosTau2|chr13 (38678638-38677431) |
|
372-1544, gnl|canFam2|chr24 (47528659-47529872) |
|
372-1544, gnl|dasNov1|scaffold_6401 (8408-7301) |
|
372-1544, gnl|hg17|chr20 (57946087-57947210) |
|
372-1544, gnl|Hg17|chr20 (57947481-57946276) |
|
372-1544, gnl|loxAfr1|scaffold_32264 (36102-34945) |
|
372-1544, gnl|mm7|chr2 (178912942-178914041) |
|
372-1544, gnl|Mm7|chr2 (178914280-178913108) |
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372-1544, gnl|monDom2|scaffold_1 (174889480-174890641) |
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372-1544, gnl|oryCun1|scaffold_150804 (60364-59324) |
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372-1544, gnl|panTro1|chr21 (60948035-60949154) |
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372-1544, gnl|rheMac2|chr10 (4600967-4599849) |
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372-1544, gnl|rn3|chr3 (167412326-167413431) |
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cbl (1.49237) |
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gul (0.532765) |
|
pro (0.512033) |
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mgp (0.461361) |
|
mga (0.32041) |
|
fat (0.294855) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
spl (0.143184) |
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hlv (0.139256) |
|
che (0.136314) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
cbl (1.49237) |
|
gul (0.532765) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
mga (0.32041) |
|
fat (0.294855) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
spc (0.113366) |
