Non-Coding RNA Search

Ss1.1-rsug29_b9.5

Sequence:


               
               GGTTTGGGGTTTTTTTAAGGCCTTTGAATGTAACTTCAGAGCTGAGAGCCACTGATCTGT
ATCCTCCAGTGATGTATTTATAAACACAGAACTCAAGTGGTTCCTGAAATAAACTCAGGA
TCTGCACTGCCTCTTTCTCAGTTGGGTAAGCAAGGATGGGGAGAAGGAAGCAGATTGGTG
CTTCAGCTCTGCTCCTTGAGATGTAAATGCAACGGGATGATTTAAAGTGAAAAGACTTCC
CACTGCCTCCTGAAAGGTAACCACTATTGTTTTATAACCTTCCAGAAAATATTAGCTGCA
TACATATACACTTTCATATATATGCATTCAGTTTATATTAAATTTTATCTTTCTATTTGA
TTATATATTTGTATCAAATTTACACAGATACTGCACCATATAATAATGGGTAACAACATT
TCCATATTACTCTTGAAAAGCTTTGGTAGCTTTCTGTGACATGAATATGCTCCCAGTGCT
CATTTTATTTCTCATCTTTGATAATACAAGAAATGCCACTATGAAAATAAATACATGTCA
CACATGCTTTTTCAAGTATATTCAGAATGTACAAGTTCCTTGTAGTGAATACTGATAGGT
CAGAGTGTATGCTATGTTAATTTTAATAAATGTTGCCATCCAAAATGGTTGCAACTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTGGGGTTTTTTTAAGGCCTTTGAATGTAACTTCAGAGCTGAGAGCCACTGATCTGT
ATCCTCCAGTGATGTATTTATAAACACAGAACTCAAGTGGTTCCTGAAATAAACTCAGGA
TCTGCACTGCCTCTTTCTCAGTTGGGTAAGCAAGGATGGGGAGAAGGAAGCAGATTGGTG
CTTCAGCTCTGCTCCTTGAGATGTAAATGCAACGGGATGATTTAAAGTGAAAAGACTTCC
CACTGCCTCCTGAAAGGTAACCACTATTGTTTTATAACCTTCCAGAAAATATTAGCTGCA
TACATATACACTTTCATATATATGCATTCAGTTTATATTAAATTTTATCTTTCTATTTGA
TTATATATTTGTATCAAATTTACACAGATACTGCACCATATAATAATGGGTAACAACATT
TCCATATTACTCTTGAAAAGCTTTGGTAGCTTTCTGTGACATGAATATGCTCCCAGTGCT
CATTTTATTTCTCATCTTTGATAATACAAGAAATGCCACTATGAAAATAAATACATGTCA
CACATGCTTTTTCAAGTATATTCAGAATGTACAAGTTCCTTGTAGTGAATACTGATAGGT
CAGAGTGTATGCTATGTTAATTTTAATAAATGTTGCCATCCAAAATGGTTGCAACTATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-349, - strand, RNAz p=0.999962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-349, - strand, RNAz p=0.999962

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               278-348, 189933 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722048.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, 463330 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI682291.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, 721003 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB461077.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, GL-Cf-9586 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN752791.1|), blast E-value=8e-24, identity=95.77% 
               

               
               278-348, DR010023B10H12 Canine normalized retinal cDNA library Canis 
(gb|DT541189.1|), blast E-value=8e-24, identity=95.77%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               278-348, 189933 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722048.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, 463330 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI682291.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, 721003 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB461077.1|), 
blast E-value=3e-26, identity=97.18% 
               

               
               278-348, GL-Cf-9586 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN752791.1|), blast E-value=8e-24, identity=95.77% 
               

               
               278-348, DR010023B10H12 Canine normalized retinal cDNA library Canis 
(gb|DT541189.1|), blast E-value=8e-24, identity=95.77%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-651, gnl|bosTau2|chr1 (96360542-96361168)
               

               
               10-651, gnl|Hg17|chr21 (36672120-36673013)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-651, gnl|bosTau2|chr1 (96360542-96361168)
               

               
               10-651, gnl|Hg17|chr21 (36672120-36673013)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               sug (0.127291)

	278-348, 189933 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE722048.1\|), blast E-value=3e-26, identity=97.18%
	278-348, 463330 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI682291.1\|), blast E-value=3e-26, identity=97.18%
	278-348, 721003 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB461077.1\|), blast E-value=3e-26, identity=97.18%
	278-348, GL-Cf-9586 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN752791.1\|), blast E-value=8e-24, identity=95.77%
	278-348, DR010023B10H12 Canine normalized retinal cDNA library Canis (gb\|DT541189.1\|), blast E-value=8e-24, identity=95.77%

	10-651, gnl\|bosTau2\|chr1 (96360542-96361168)
	10-651, gnl\|Hg17\|chr21 (36672120-36673013)