Ss1.1-rsug29_d2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGTTGGGCCCAGGCTCCCTGGCCGCTTGGTAGTCCCGCCGCCTCCTTCTCCTCCTC CCCCTCCTCTCGTCCTCTGTGGGCCGAGGAGGTTGTGGCGGCGGCTGGAAAACTCGGCGG CGGAGGATGGAGGAAGGAGGCGGCGGCTCTCGGAGTCTGGTCCCAGGCGGACAGGTGTTA CTTGTCCTCTGCGGTCTCCTAGAGGCGTCCGGCGGCGGCCGAGCGCTGCCCCAGCTCAGC GATGACATCCCTTTCCGAGTCAACTGGCCCGGCACCGAGTTCTCTCTGCCTACAACTGGA GTTTTATATAAAGAAGATAATTATGTCATCATGACAACTACACATAAAGAAAAATATAAA TGCATTCTTCCCCTTGTGACAAGTGGGGATGAGGAAGAAGAAAAGGATTATAAAGGCCCT AATCCAAGAGAACTGTTGGAGCCACTATTTAAACAAAGCAGTTGTTCCTACAGAATTGAG TCTTATTGGACTTATGAAGTATGTCATGGAAAACACATTCGGCAGTACCATGAAGAGAAA GAAAGTGGTCAGAAAGTAAATATTCATGAGTACTACCTTGGAAATATGATGGCTAAGAAC CTTCTATCTGAAAAAGAACAAGAAGCAGAAGAAAAGGAAAAATCAAAAGAGATTCCCACT AAAAATATCGAAGGTCAGATGACACCCTACTATCCAGTGGGAATGGGAAATGGTACACCT TGTAGTTTGAAACAGAACCGGCCCAGATCAAGTACTGTGATGTACATATGTCATCCTGAA TCTAAGCATGAAATTCTTTCAGTAGCTGAAGTTACAACTTGTGAATATGAAGTTGTCATT TTGACACCACTCTTGTGCAATCATCCTAAATATAGATTCAGAGCATCTCCTGTGAATGAC ATATTTTGCCAGTCACTACCAGGATCACCATTTAAACCCCTCACCCTGAGACAGTTGGAG CAGCAGGAAGAAATACTAAGGGTGCCTTTTAAGAGAAATAAAGAGGAAGATTTACAATCA ACTAAGGAAGAGAGATTTCCAGCAATCCACAAACCCATTGCTGTTGGTTCTCAGCCAGTG CTCACTGTTGGAACAACGCACATATCCAAACTGACAGATGACCAACTCATAAAAGAGTTC CTTAGTGGTTCCTACTGCTTTCACGGGGGTGTCGGTTGGTGGAAATACGAATTCTGCTAT GGCAAACATGTACATCAATACCATGAGGACAAGGATAGCGGGAAAACCTCTGTGGTTGTG GGGACATGGAACCAAGAAGAACATATTGAATGGGCTAAAAAGAACACTGCTAGAGCCTAT CACCTTCAGGATGACGGTACCCAGACAGTCAGGATGGTGTCACATTTTTACGGGAATGGA GATATTTGTGATATAACTGACAAACCAAGACAGGTGACTGTAAAACTAAAGTGTAAAGAA TCAGATTCTCCACATGCTGTTACTGTATATATGCTAGAGCCTCACTCCTGTCAGTATATC CTTGGGGTTGAATCTCCAGTGATCTGTAAAATCTTAGATACAGCAGATGAAAATGGACTT CTTTCTCTCCCCAACTAAAGGATAATAAAGTTCAGGGGGAAAAAAGATCATTGGAAGTCA TGATTTCTGTCTGACCATGTGTCTCATTATAGAGCTTTCACCTGTTGGACCTCATCTAAA GGATCATATAAAAGGACTCTCAACCACTTTGTGAATATATATATGTGTACATAAGAGGTT ATTGATAAACTTTTAAGGCAGACATTTTTCTCACCGTTTTCAGTTTTGTTGTGTCTTATA AACTGATTGTGTGGGGGTTTTTTGCTTGGATAATGTGATTCCAAAATAAGTATTGTCCAG GCAATTTAGAATCTATCCTAATGAAATGTCTTAATCGTTGTACCTATTGAAAGTTTTTTT AAATAATAGATTTATTATGTAAATTATAGTATATATAACTAGTTAATGAAGTAAGGATAA TGAAAAAAGAAAATGATAGAAAGTTGTTTAAATGAGAGACCGTGTTAAATATGTAAATTC TAATGTCTGAAATCCTTTCAACAGATTTTTATTTAGCAACTGCTCTCTGCCAGGTGGCAA ACTAGAAACCAAGCCCATGCTAAAGCCTCACATACAAGTTTTCTTCTGCTAATCTCAAGA AACTCTTAATTGCAAAATGTTGCTTCTCTCTCAGAACTTTTATCTTTTCTTTCTTCTTGA TTTGAGTGTGTCCCCCAAAATATGTACCTGGTGTAGACTGACATTGATTCTTCTCTTTTG ACTTAATGATTGGCACTAACAAAACACACTGTGCTGGCTATCCTTTGTACTCTCCTACTG TATACCACAGATTTTATTACTGGACAGTTTCACAACACAGTATTTATTTTAATGTGAATA AAATGTCCACAAGCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGTTGGGCCCAGGCTCCCTGGCCGCTTGGTAGTCCCGCCGCCTCCTTCTCCTCCTC CCCCTCCTCTCGTCCTCTGTGGGCCGAGGAGGTTGTGGCGGCGGCTGGAAAACTCGGCGG CGGAGGATGGAGGAAGGAGGCGGCGGCTCTCGGAGTCTGGTCCCAGGCGGACAGGTGTTA CTTGTCCTCTGCGGTCTCCTAGAGGCGTCCGGCGGCGGCCGAGCGCTGCCCCAGCTCAGC GATGACATCCCTTTCCGAGTCAACTGGCCCGGCACCGAGTTCTCTCTGCCTACAACTGGA GTTTTATATAAAGAAGATAATTATGTCATCATGACAACTACACATAAAGAAAAATATAAA TGCATTCTTCCCCTTGTGACAAGTGGGGATGAGGAAGAAGAAAAGGATTATAAAGGCCCT AATCCAAGAGAACTGTTGGAGCCACTATTTAAACAAAGCAGTTGTTCCTACAGAATTGAG TCTTATTGGACTTATGAAGTATGTCATGGAAAACACATTCGGCAGTACCATGAAGAGAAA GAAAGTGGTCAGAAAGTAAATATTCATGAGTACTACCTTGGAAATATGATGGCTAAGAAC CTTCTATCTGAAAAAGAACAAGAAGCAGAAGAAAAGGAAAAATCAAAAGAGATTCCCACT AAAAATATCGAAGGTCAGATGACACCCTACTATCCAGTGGGAATGGGAAATGGTACACCT TGTAGTTTGAAACAGAACCGGCCCAGATCAAGTACTGTGATGTACATATGTCATCCTGAA TCTAAGCATGAAATTCTTTCAGTAGCTGAAGTTACAACTTGTGAATATGAAGTTGTCATT TTGACACCACTCTTGTGCAATCATCCTAAATATAGATTCAGAGCATCTCCTGTGAATGAC ATATTTTGCCAGTCACTACCAGGATCACCATTTAAACCCCTCACCCTGAGACAGTTGGAG CAGCAGGAAGAAATACTAAGGGTGCCTTTTAAGAGAAATAAAGAGGAAGATTTACAATCA ACTAAGGAAGAGAGATTTCCAGCAATCCACAAACCCATTGCTGTTGGTTCTCAGCCAGTG CTCACTGTTGGAACAACGCACATATCCAAACTGACAGATGACCAACTCATAAAAGAGTTC CTTAGTGGTTCCTACTGCTTTCACGGGGGTGTCGGTTGGTGGAAATACGAATTCTGCTAT GGCAAACATGTACATCAATACCATGAGGACAAGGATAGCGGGAAAACCTCTGTGGTTGTG GGGACATGGAACCAAGAAGAACATATTGAATGGGCTAAAAAGAACACTGCTAGAGCCTAT CACCTTCAGGATGACGGTACCCAGACAGTCAGGATGGTGTCACATTTTTACGGGAATGGA GATATTTGTGATATAACTGACAAACCAAGACAGGTGACTGTAAAACTAAAGTGTAAAGAA TCAGATTCTCCACATGCTGTTACTGTATATATGCTAGAGCCTCACTCCTGTCAGTATATC CTTGGGGTTGAATCTCCAGTGATCTGTAAAATCTTAGATACAGCAGATGAAAATGGACTT CTTTCTCTCCCCAACTAAAGGATAATAAAGTTCAGGGGGAAAAAAGATCATTGGAAGTCA TGATTTCTGTCTGACCATGTGTCTCATTATAGAGCTTTCACCTGTTGGACCTCATCTAAA GGATCATATAAAAGGACTCTCAACCACTTTGTGAATATATATATGTGTACATAAGAGGTT ATTGATAAACTTTTAAGGCAGACATTTTTCTCACCGTTTTCAGTTTTGTTGTGTCTTATA AACTGATTGTGTGGGGGTTTTTTGCTTGGATAATGTGATTCCAAAATAAGTATTGTCCAG GCAATTTAGAATCTATCCTAATGAAATGTCTTAATCGTTGTACCTATTGAAAGTTTTTTT AAATAATAGATTTATTATGTAAATTATAGTATATATAACTAGTTAATGAAGTAAGGATAA TGAAAAAAGAAAATGATAGAAAGTTGTTTAAATGAGAGACCGTGTTAAATATGTAAATTC TAATGTCTGAAATCCTTTCAACAGATTTTTATTTAGCAACTGCTCTCTGCCAGGTGGCAA ACTAGAAACCAAGCCCATGCTAAAGCCTCACATACAAGTTTTCTTCTGCTAATCTCAAGA AACTCTTAATTGCAAAATGTTGCTTCTCTCTCAGAACTTTTATCTTTTCTTTCTTCTTGA TTTGAGTGTGTCCCCCAAAATATGTACCTGGTGTAGACTGACATTGATTCTTCTCTTTTG ACTTAATGATTGGCACTAACAAAACACACTGTGCTGGCTATCCTTTGTACTCTCCTACTG TATACCACAGATTTTATTACTGGACAGTTTCACAACACAGTATTTATTTTAATGTGAATA AAATGTCCACAAGCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 43-157, - strand, RNAz p=0.998034 | |
| 1043-1162, - strand, RNAz p=0.601223 | |
| 1501-1658, - strand, RNAz p=0.932723 | |
| 2272-2391, - strand, RNAz p=0.977913 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 43-157, - strand, RNAz p=0.998034 | |
| 1043-1162, - strand, RNAz p=0.601223 | |
| 1501-1658, - strand, RNAz p=0.932723 | |
| 2272-2391, - strand, RNAz p=0.977913 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-288, gnl|bosTau2|chr11 (25613027-25613312) | |
| 1-288, gnl|Hg17|chr2 (53925870-53926160) | |
| 1-288, gnl|Mm7|chr11 (30906323-30905920) | |
| 392-494, gnl|bosTau2|chr11 (25620797-25620901) | |
| 392-494, gnl|Hg17|chr2 (53934719-53934823) | |
| 392-494, gnl|Mm7|chr11 (30903395-30903292) | |
| 650-875, gnl|bosTau2|chr11 (25624525-25624750) | |
| 650-875, gnl|Hg17|chr2 (53940183-53940408) | |
| 650-875, gnl|Mm7|chr11 (30900531-30900306) | |
| 1004-1168, gnl|bosTau2|chr11 (25630007-25630171) | |
| 1004-1168, gnl|canFam2|chr31 (14156681-14156802) | |
| 1004-1168, gnl|dasNov1|scaffold_127622 (4646-4532) | |
| 1004-1168, gnl|echTel1|scaffold_91838 (710-824) | |
| 1004-1168, gnl|Hg17|chr2 (53947085-53947249) | |
| 1004-1168, gnl|hg17|chr21 (14437833-14437947) | |
| 1004-1168, gnl|loxAfr1|scaffold_17678 (18237-18123) | |
| 1004-1168, gnl|mm7|chr11 (30895823-30895709) | |
| 1004-1168, gnl|Mm7|chr11 (30895868-30895704) | |
| 1004-1168, gnl|oryCun1|scaffold_180734 (7063-6956) | |
| 1004-1168, gnl|panTro1|chr22 (14418557-14418671) | |
| 1004-1168, gnl|rheMac2|chr3 (32750150-32750036) | |
| 1004-1168, gnl|rn3|chr14 (112085027-112084913) | |
| 1223-1353, gnl|bosTau2|chr11 (25633671-25633801) | |
| 1223-1353, gnl|Hg17|chr2 (53951732-53951862) | |
| 1223-1353, gnl|Mm7|chr11 (30891632-30891502) | |
| 1501-2415, gnl|bosTau2|chr11 (25636336-25637241) | |
| 1501-2415, gnl|Hg17|chr2 (53956680-53957584) | |
| 1501-2415, gnl|Mm7|chr11 (30883860-30882974) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-288, gnl|bosTau2|chr11 (25613027-25613312) | |
| 1-288, gnl|Hg17|chr2 (53925870-53926160) | |
| 1-288, gnl|Mm7|chr11 (30906323-30905920) | |
| 392-494, gnl|bosTau2|chr11 (25620797-25620901) | |
| 392-494, gnl|Hg17|chr2 (53934719-53934823) | |
| 392-494, gnl|Mm7|chr11 (30903395-30903292) | |
| 650-875, gnl|bosTau2|chr11 (25624525-25624750) | |
| 650-875, gnl|Hg17|chr2 (53940183-53940408) | |
| 650-875, gnl|Mm7|chr11 (30900531-30900306) | |
| 1004-1168, gnl|bosTau2|chr11 (25630007-25630171) | |
| 1004-1168, gnl|canFam2|chr31 (14156681-14156802) | |
| 1004-1168, gnl|dasNov1|scaffold_127622 (4646-4532) | |
| 1004-1168, gnl|echTel1|scaffold_91838 (710-824) | |
| 1004-1168, gnl|Hg17|chr2 (53947085-53947249) | |
| 1004-1168, gnl|hg17|chr21 (14437833-14437947) | |
| 1004-1168, gnl|loxAfr1|scaffold_17678 (18237-18123) | |
| 1004-1168, gnl|mm7|chr11 (30895823-30895709) | |
| 1004-1168, gnl|Mm7|chr11 (30895868-30895704) | |
| 1004-1168, gnl|oryCun1|scaffold_180734 (7063-6956) | |
| 1004-1168, gnl|panTro1|chr22 (14418557-14418671) | |
| 1004-1168, gnl|rheMac2|chr3 (32750150-32750036) | |
| 1004-1168, gnl|rn3|chr14 (112085027-112084913) | |
| 1223-1353, gnl|bosTau2|chr11 (25633671-25633801) | |
| 1223-1353, gnl|Hg17|chr2 (53951732-53951862) | |
| 1223-1353, gnl|Mm7|chr11 (30891632-30891502) | |
| 1501-2415, gnl|bosTau2|chr11 (25636336-25637241) | |
| 1501-2415, gnl|Hg17|chr2 (53956680-53957584) | |
| 1501-2415, gnl|Mm7|chr11 (30883860-30882974) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| pro (1.02407) | |
| cty (0.62448) | |
| mgm (0.541028) | |
| lin (0.436808) | |
| kid (0.389206) | |
| sug (0.381874) | |
| sag (0.36543) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| csk (0.281492) | |
| ret (0.257467) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| cty (0.62448) | |
| mgm (0.541028) | |
| lin (0.436808) | |
| kid (0.389206) | |
| sug (0.381874) | |
| sag (0.36543) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| csk (0.281492) | |
| ret (0.257467) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| ldo (0.0970026) |