Non-Coding RNA Search

Ss1.1-rsug29_o10.5

Sequence:


               
               TTTTTTTCATTCGTACATTTTTTCTCTTGCAATCAGAAAAATATAGTCTTTAAAAAAAAC
CCCAGTAACATTACACTTTGGTTGCACTCAGTTCGTAGAGGACAGACACCCAGGCTGCAT
TCTTTCTTCTCTTTTTAAATGTCAGTCAGGATGAAAGATATTCATGAACCTTTGCAGGAG
CTAATTGTGTATTCTTGGAAAATCGCTAACTCTTCTGGATGTTGATTTTTTTTTTTTATC
TGAAAATTAGAGGATTAGATTTGAGAAATTCGAATGCGCGATTCGGCCTTTCGGCCTATA
ACTCCGCCCATGGGCGGGAGCGCATTCTGCAAATAGCCTAGAGAAACAGAAAGATGACAG
GGGCCGGCTTCCCTCGAGTGAAACCGAGTACAGCAAAGGGGACCGTCAATGGAGAAAGAC
AGACACGATTTTTCCACATCAAGTAGTAATCTCACACTTCAACCTGTGACTCAAGCACCA
TACCATGGGATCCCTAATTTTACCAGAAGGTTGAATCACCCACTGTCAGAACGGAATTCG
TCCAGCTGTGGTCAAGGCGGGTGCCTTCTACCTTCTCCCCTGAGAACAAACGGAATTCAG
GCTTTTCCCTGGGGCTTTTCTTTAGTATGTGCCAAACACCAGACCTGCAATTTGCCCCCC
TCCACCCTTCTTCTTTTGTAGGAAGCATCATTCATGCCTGAGCTATTGAATCATTGCATA
TTTGGGAGAACAAGATTTTTCAGGGGCTCTACAGGTAGATCCGTTTAAAGCATTGGCCTT
CTATTTACTCCCTATTCATCTTTCATCAAAACAAAATAGCAGCTGTAGGAGGTGGAATGA
GTGGGCTTCAAAGCAATTTGAAATGTGCTTTTATATACAAATAATATCTGTATTTTTCTG
ATGCTGATAAATACATTTCAAAACAAATTTTGTTCAAATGATAATGATTAAAAAACTCAT
GAAAGATACTCTCCTTTGGAATTTTAAAATCTGTGATATGTTAATTTTAAAGAATCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTCATTCGTACATTTTTTCTCTTGCAATCAGAAAAATATAGTCTTTAAAAAAAAC
CCCAGTAACATTACACTTTGGTTGCACTCAGTTCGTAGAGGACAGACACCCAGGCTGCAT
TCTTTCTTCTCTTTTTAAATGTCAGTCAGGATGAAAGATATTCATGAACCTTTGCAGGAG
CTAATTGTGTATTCTTGGAAAATCGCTAACTCTTCTGGATGTTGATTTTTTTTTTTTATC
TGAAAATTAGAGGATTAGATTTGAGAAATTCGAATGCGCGATTCGGCCTTTCGGCCTATA
ACTCCGCCCATGGGCGGGAGCGCATTCTGCAAATAGCCTAGAGAAACAGAAAGATGACAG
GGGCCGGCTTCCCTCGAGTGAAACCGAGTACAGCAAAGGGGACCGTCAATGGAGAAAGAC
AGACACGATTTTTCCACATCAAGTAGTAATCTCACACTTCAACCTGTGACTCAAGCACCA
TACCATGGGATCCCTAATTTTACCAGAAGGTTGAATCACCCACTGTCAGAACGGAATTCG
TCCAGCTGTGGTCAAGGCGGGTGCCTTCTACCTTCTCCCCTGAGAACAAACGGAATTCAG
GCTTTTCCCTGGGGCTTTTCTTTAGTATGTGCCAAACACCAGACCTGCAATTTGCCCCCC
TCCACCCTTCTTCTTTTGTAGGAAGCATCATTCATGCCTGAGCTATTGAATCATTGCATA
TTTGGGAGAACAAGATTTTTCAGGGGCTCTACAGGTAGATCCGTTTAAAGCATTGGCCTT
CTATTTACTCCCTATTCATCTTTCATCAAAACAAAATAGCAGCTGTAGGAGGTGGAATGA
GTGGGCTTCAAAGCAATTTGAAATGTGCTTTTATATACAAATAATATCTGTATTTTTCTG
ATGCTGATAAATACATTTCAAAACAAATTTTGTTCAAATGATAATGATTAAAAAACTCAT
GAAAGATACTCTCCTTTGGAATTTTAAAATCTGTGATATGTTAATTTTAAAGAATCTTTC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               209-730, gnl|bosTau2|chr20 (20135027-20135545)
               

               
               209-730, gnl|Hg17|chr5 (41017680-41018525)
               

               
               209-730, gnl|Mm7|chr15 (4813417-4812405)
               


               
               733-1018, gnl|bosTau2|chr20 (20135574-20135854)
               

               
               733-1018, gnl|Hg17|chr5 (41018556-41018836)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               209-730, gnl|bosTau2|chr20 (20135027-20135545)
               

               
               209-730, gnl|Hg17|chr5 (41017680-41018525)
               

               
               209-730, gnl|Mm7|chr15 (4813417-4812405)
               


               
               733-1018, gnl|bosTau2|chr20 (20135574-20135854)
               

               
               733-1018, gnl|Hg17|chr5 (41018556-41018836)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               spl (0.572738)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               sug (0.254582)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.572738)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               sug (0.254582)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	209-730, gnl\|bosTau2\|chr20 (20135027-20135545)
	209-730, gnl\|Hg17\|chr5 (41017680-41018525)
	209-730, gnl\|Mm7\|chr15 (4813417-4812405)

	733-1018, gnl\|bosTau2\|chr20 (20135574-20135854)
	733-1018, gnl\|Hg17\|chr5 (41018556-41018836)

	spl (0.572738)
	rec (0.346141)
	cut (0.339847)
	nco (0.323468)
	sug (0.254582)
	aor (0.195274)
	nlu (0.191681)
	sto (0.179824)
	ill (0.175593)
	duo (0.172801)
	cki (0.165235)
	liv (0.146284)
	lnt (0.142308)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)
	jej (0.0989218)