Non-Coding RNA Search

Ss1.1-rsug29_o2.5

Sequence:


               
               TTCAGAAATGCCCCCCCCTTTTGCCCACAACAGATTCTATGACATACTGCTAATTATTAT
ATTTCTTTAGGGGGTACTTTGAGGCACTTTCAAAGACACATCTGTAGCAGTTAGGTCTAA
ATTTAGGGCAGAACATTCTGTCAGATATTTTACTATATCACAAAATGTTAAGACTACTGT
ATTTTATAATAAAACCAAATTCTCAAATACTCTGGTAATATGACATATTATTATACCAAA
AAAACCACTTTCTAGAAGCCTATTATCGTGTCCTTAATCTTTTAAGAAAATAATGGGTAT
TTCAGTCCTAGCAAGAAAGTCAAATGCAGTACATGTCATTAAATCGATCTTTAGTCAAAA
TCCATCTAGGCATTTGACAGGGAAACTAGCAAACATAAGCTCGAATGTATCCATTGTTCT
CAAGGACACAATGGCAAACGATAATACACAAAGACATGGTCACTGAGGCAAGTCAGGCGG
TGTGCAGACCGAGAAGGATCAACTTGCCAATGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGAAATGCCCCCCCCTTTTGCCCACAACAGATTCTATGACATACTGCTAATTATTAT
ATTTCTTTAGGGGGTACTTTGAGGCACTTTCAAAGACACATCTGTAGCAGTTAGGTCTAA
ATTTAGGGCAGAACATTCTGTCAGATATTTTACTATATCACAAAATGTTAAGACTACTGT
ATTTTATAATAAAACCAAATTCTCAAATACTCTGGTAATATGACATATTATTATACCAAA
AAAACCACTTTCTAGAAGCCTATTATCGTGTCCTTAATCTTTTAAGAAAATAATGGGTAT
TTCAGTCCTAGCAAGAAAGTCAAATGCAGTACATGTCATTAAATCGATCTTTAGTCAAAA
TCCATCTAGGCATTTGACAGGGAAACTAGCAAACATAAGCTCGAATGTATCCATTGTTCT
CAAGGACACAATGGCAAACGATAATACACAAAGACATGGTCACTGAGGCAAGTCAGGCGG
TGTGCAGACCGAGAAGGATCAACTTGCCAATGCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               330-435, - strand, RNAz p=0.523223

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-435, - strand, RNAz p=0.523223

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               18-511, gnl|bosTau2|chrX (34476269-34475783)
               

               
               18-511, gnl|canFam2|chrX (32401055-32401691)
               

               
               18-511, gnl|dasNov1|scaffold_4308 (9988-10592)
               

               
               18-511, gnl|echTel1|scaffold_318960 (124505-125145)
               

               
               18-511, gnl|hg17|chrX (37298772-37299407)
               

               
               18-511, gnl|Hg17|chrX (37299033-37299510)
               

               
               18-511, gnl|mm7|chrX (7703159-7703768)
               

               
               18-511, gnl|Mm7|chrX (7703395-7703866)
               

               
               18-511, gnl|monDom2|scaffold_29 (27383981-27383280)
               

               
               18-511, gnl|oryCun1|scaffold_198465 (76251-75608)
               

               
               18-511, gnl|panTro1|chrX (38405279-38405919)
               

               
               18-511, gnl|rheMac2|chrX (35444260-35444903)
               

               
               18-511, gnl|rn3|chrX (25681262-25680637)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-511, gnl|bosTau2|chrX (34476269-34475783)
               

               
               18-511, gnl|canFam2|chrX (32401055-32401691)
               

               
               18-511, gnl|dasNov1|scaffold_4308 (9988-10592)
               

               
               18-511, gnl|echTel1|scaffold_318960 (124505-125145)
               

               
               18-511, gnl|hg17|chrX (37298772-37299407)
               

               
               18-511, gnl|Hg17|chrX (37299033-37299510)
               

               
               18-511, gnl|mm7|chrX (7703159-7703768)
               

               
               18-511, gnl|Mm7|chrX (7703395-7703866)
               

               
               18-511, gnl|monDom2|scaffold_29 (27383981-27383280)
               

               
               18-511, gnl|oryCun1|scaffold_198465 (76251-75608)
               

               
               18-511, gnl|panTro1|chrX (38405279-38405919)
               

               
               18-511, gnl|rheMac2|chrX (35444260-35444903)
               

               
               18-511, gnl|rn3|chrX (25681262-25680637)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               ebs (0.118301)

	18-511, gnl\|bosTau2\|chrX (34476269-34475783)
	18-511, gnl\|canFam2\|chrX (32401055-32401691)
	18-511, gnl\|dasNov1\|scaffold_4308 (9988-10592)
	18-511, gnl\|echTel1\|scaffold_318960 (124505-125145)
	18-511, gnl\|hg17\|chrX (37298772-37299407)
	18-511, gnl\|Hg17\|chrX (37299033-37299510)
	18-511, gnl\|mm7\|chrX (7703159-7703768)
	18-511, gnl\|Mm7\|chrX (7703395-7703866)
	18-511, gnl\|monDom2\|scaffold_29 (27383981-27383280)
	18-511, gnl\|oryCun1\|scaffold_198465 (76251-75608)
	18-511, gnl\|panTro1\|chrX (38405279-38405919)
	18-511, gnl\|rheMac2\|chrX (35444260-35444903)
	18-511, gnl\|rn3\|chrX (25681262-25680637)