Non-Coding RNA Search

Ss1.1-rsug30_a21.5

Sequence:


               
               AACCCCCATTTCCACTTAGAAGCAGGACCTTCCTAAAACTTAGCCCACCTTAGTCTCTCT
TAGGTGAGTTGACTGTCACCCCAAGGTAATGGGGAGGCTCAAAAGGAGGTTGGGTGGAGG
GCCTTGGCCTAGAGGGCTGAGGCCTGACCCTACTTTAAAGGGTTGTTTGACAAAGTTTTG
CTCCCCCCCTCCCTTATTTTGACTGGTTATAGGTTTTTGACTCTGGATGACAGCATTGAT
GAGACTTTTTCTACAGTAGGTTGGGAGATGCTGATCCCTTCAGGTGGGGACAGCAAAGAG
ACAGAAGCAAAACTGATATGCACTTTATGGCTTGGGACTGATTTGAGGGATGCTGTACAG
TGGGTGAAGCATGGCCTTTATGCTGCATTCTGTGGCCCTAGAACAGTGAATTAAAGCTTA
TCTAGTCATCTCAACCCTTTAAGCAATATGTATTATAAACTCAGAGAACAGAAGTGCAAT
GTGAGGGGAGGGACATAGCAATATCTGCTCCTTTTTGAGTTGTTTGAGAAACGTAAAAGA
CTATTTTTTCAGTGTATATCCATTTAGATTTCGTGTATTTTTGATGTGCACTGTTCTCCA
AGTTCTGAACCTTTGGGAAAAAAAGTAAAGCATTTATGATCTCTTGAATTGAGTCAGAGC
TTAACTTATTTAAAGAGGGATGTACCTCGGCCGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCCCATTTCCACTTAGAAGCAGGACCTTCCTAAAACTTAGCCCACCTTAGTCTCTCT
TAGGTGAGTTGACTGTCACCCCAAGGTAATGGGGAGGCTCAAAAGGAGGTTGGGTGGAGG
GCCTTGGCCTAGAGGGCTGAGGCCTGACCCTACTTTAAAGGGTTGTTTGACAAAGTTTTG
CTCCCCCCCTCCCTTATTTTGACTGGTTATAGGTTTTTGACTCTGGATGACAGCATTGAT
GAGACTTTTTCTACAGTAGGTTGGGAGATGCTGATCCCTTCAGGTGGGGACAGCAAAGAG
ACAGAAGCAAAACTGATATGCACTTTATGGCTTGGGACTGATTTGAGGGATGCTGTACAG
TGGGTGAAGCATGGCCTTTATGCTGCATTCTGTGGCCCTAGAACAGTGAATTAAAGCTTA
TCTAGTCATCTCAACCCTTTAAGCAATATGTATTATAAACTCAGAGAACAGAAGTGCAAT
GTGAGGGGAGGGACATAGCAATATCTGCTCCTTTTTGAGTTGTTTGAGAAACGTAAAAGA
CTATTTTTTCAGTGTATATCCATTTAGATTTCGTGTATTTTTGATGTGCACTGTTCTCCA
AGTTCTGAACCTTTGGGAAAAAAAGTAAAGCATTTATGATCTCTTGAATTGAGTCAGAGC
TTAACTTATTTAAAGAGGGATGTACCTCGGCCGCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-192, + strand, RNAz p=0.938056

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-192, + strand, RNAz p=0.938056

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000399, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-685, gnl|bosTau2|chr28 (13118027-13117339)
               

               
               3-685, gnl|Hg17|chr10 (64242828-64242166)
               

               
               3-685, gnl|Mm7|chr10 (67144497-67145151)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-685, gnl|bosTau2|chr28 (13118027-13117339)
               

               
               3-685, gnl|Hg17|chr10 (64242828-64242166)
               

               
               3-685, gnl|Mm7|chr10 (67144497-67145151)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	3-685, gnl\|bosTau2\|chr28 (13118027-13117339)
	3-685, gnl\|Hg17\|chr10 (64242828-64242166)
	3-685, gnl\|Mm7\|chr10 (67144497-67145151)