Non-Coding RNA Search

Ss1.1-rsug30_b18.5

Sequence:


               
               CTTTCCCCCTTTTGCCCTTGAAAAAGAGGCCAGGGAAAATGGGCCTTATTATACATTTTA
TCCCCCATCCCCAAATTTGTGACCTGCTGTCTTTCCGGGCTCCTGGTTTTTAAGGACGCC
CCTTTTTCCCCAGATCACTCCCTATTGAAGGGATATTCATTTTTGTTGTACAGATCCAAA
AAGCCTTTTGTCCCCCCCTCTTGGGGATTTTTTTATTGACGGAAAATTTTTTGGCACATA
AGCCCTTTGAAAATGGTAGGCCATTCCGAACTGTACACTTATTTTAAATTTGTAAATTTG
TATCAAATGAAAATGTTCACTTTTCGAGGGTCCTTAATAGAAATGGGGGAGCAATTTTTG
AGTATCTTCAGTTTCCTGAAAGGACACTGGATTCTCCATTAGACAAGCCACAGTGTTGTC
CACATCATCTCTTTAACCTTGCACGCTTTCTTTGTGTACTCAAGTGTTTCTGAAAATATA
TAGAACCACCGTACGCTGACCCGATGCATTGTTTGCTTCAGATCCTGGCATCACATCTTA
TACAGACCATTTGGTTATGTTAAAAGAGAATTGTCTGGGATCAAGGATATAGAGATGTCA
CACACATCAAATTAGCGAAATAGGGGTCTCGGACTTTTACTGCACCAGTTAAGACTTAAG
ATTTCAGGACTGACCTTCCTTGTATTAAATGATTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCCCCCTTTTGCCCTTGAAAAAGAGGCCAGGGAAAATGGGCCTTATTATACATTTTA
TCCCCCATCCCCAAATTTGTGACCTGCTGTCTTTCCGGGCTCCTGGTTTTTAAGGACGCC
CCTTTTTCCCCAGATCACTCCCTATTGAAGGGATATTCATTTTTGTTGTACAGATCCAAA
AAGCCTTTTGTCCCCCCCTCTTGGGGATTTTTTTATTGACGGAAAATTTTTTGGCACATA
AGCCCTTTGAAAATGGTAGGCCATTCCGAACTGTACACTTATTTTAAATTTGTAAATTTG
TATCAAATGAAAATGTTCACTTTTCGAGGGTCCTTAATAGAAATGGGGGAGCAATTTTTG
AGTATCTTCAGTTTCCTGAAAGGACACTGGATTCTCCATTAGACAAGCCACAGTGTTGTC
CACATCATCTCTTTAACCTTGCACGCTTTCTTTGTGTACTCAAGTGTTTCTGAAAATATA
TAGAACCACCGTACGCTGACCCGATGCATTGTTTGCTTCAGATCCTGGCATCACATCTTA
TACAGACCATTTGGTTATGTTAAAAGAGAATTGTCTGGGATCAAGGATATAGAGATGTCA
CACACATCAAATTAGCGAAATAGGGGTCTCGGACTTTTACTGCACCAGTTAAGACTTAAG
ATTTCAGGACTGACCTTCCTTGTATTAAATGATTCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               47-403, - strand, RNAz p=0.983026
               

               
               152-270, - strand, RNAz p=0.691461

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-403, - strand, RNAz p=0.983026
               

               
               152-270, - strand, RNAz p=0.691461

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               226-191, DB807842 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807842.1|), blast E-value=0.000000000000002, identity=91.43% 
               

               
               226-191, DB820758 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820758.1|), blast E-value=0, identity=93.1% 
               

               
               226-403, CH3#065_H03T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF410271.1|), blast E-value=0, identity=91.01% 
               

               
               226-403, 1154688 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275590.1|), 
blast E-value=0, identity=90.45% 
               

               
               226-403, 1157760 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN278450.1|), 
blast E-value=0, identity=90.45% 
               

               
               226-403, LIB3581-008-Q7-J1-E1 LIB3581 Canis familiaris cDNA clone 
(gb|DN354092.1|), blast E-value=0, identity=91.01%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               226-191, DB807842 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807842.1|), blast E-value=0.000000000000002, identity=91.43% 
               

               
               226-191, DB820758 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820758.1|), blast E-value=0, identity=93.1% 
               

               
               226-403, CH3#065_H03T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF410271.1|), blast E-value=0, identity=91.01% 
               

               
               226-403, 1154688 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN275590.1|), 
blast E-value=0, identity=90.45% 
               

               
               226-403, 1157760 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN278450.1|), 
blast E-value=0, identity=90.45% 
               

               
               226-403, LIB3581-008-Q7-J1-E1 LIB3581 Canis familiaris cDNA clone 
(gb|DN354092.1|), blast E-value=0, identity=91.01%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               34-694, gnl|bosTau2|chr3 (21211759-21211081)
               

               
               34-694, gnl|Hg17|chr1 (118125281-118124605)
               

               
               34-694, gnl|Mm7|chr3 (100000588-100001305)
               


               
               47-482, gnl|bosTau2|chr10 (7094548-7094980)
               

               
               47-482, gnl|Hg17|chr1 (118125268-118124847)
               

               
               47-482, gnl|Mm7|chr3 (100000601-100001085)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-694, gnl|bosTau2|chr3 (21211759-21211081)
               

               
               34-694, gnl|Hg17|chr1 (118125281-118124605)
               

               
               34-694, gnl|Mm7|chr3 (100000588-100001305)
               


               
               47-482, gnl|bosTau2|chr10 (7094548-7094980)
               

               
               47-482, gnl|Hg17|chr1 (118125268-118124847)
               

               
               47-482, gnl|Mm7|chr3 (100000601-100001085)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               nbm (0.0993246)

	47-403, - strand, RNAz p=0.983026
	152-270, - strand, RNAz p=0.691461

	226-191, DB807842 full-length enriched swine cDNA library, adult lung Sus (dbj\|DB807842.1\|), blast E-value=0.000000000000002, identity=91.43%
	226-191, DB820758 full-length enriched swine cDNA library, adult uterus Sus (dbj\|DB820758.1\|), blast E-value=0, identity=93.1%
	226-403, CH3#065_H03T3 Canine heart normalized cDNA Library in pBluescript (gb\|CF410271.1\|), blast E-value=0, identity=91.01%
	226-403, 1154688 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN275590.1\|), blast E-value=0, identity=90.45%
	226-403, 1157760 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN278450.1\|), blast E-value=0, identity=90.45%
	226-403, LIB3581-008-Q7-J1-E1 LIB3581 Canis familiaris cDNA clone (gb\|DN354092.1\|), blast E-value=0, identity=91.01%

	34-694, gnl\|bosTau2\|chr3 (21211759-21211081)
	34-694, gnl\|Hg17\|chr1 (118125281-118124605)
	34-694, gnl\|Mm7\|chr3 (100000588-100001305)

	47-482, gnl\|bosTau2\|chr10 (7094548-7094980)
	47-482, gnl\|Hg17\|chr1 (118125268-118124847)
	47-482, gnl\|Mm7\|chr3 (100000601-100001085)