Ss1.1-rsug30_f14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCAGATCTGCATACTGCACGCTTGGAAAATGAGAAAGTAAAAAAGCAGTTAGCCGAT GCAGTGGCAGAGCTTAAACTAAGTGCTGTGAAAAAAGACCAGGAAAAGACTGAAACACTG GAACACGAACTGAGAAGAGAAGTTGAAGATCTGAAACTTCGTCTTCAGATGGCAGCAGAT CATTATAAAGAAAAATTCAAGGAATGCCAGAGACTCCAAAAACAAATAAATAAACTTTCA GACCAATCGGCTAATAACAATAGTGTCTTCACAAAGAAAGTTGGGAGTCAGCAGAAAGTG ATTGATGCTTCAATAAACACAGACCCAGCTACTGCTGCCTCTACTCTTGATGTAAAGCCA CCACCTTCTGCAGCTGAGACCGATTTTGACAGTCTGACCAAGGGACAAGTCTCTGAAATG ACCAAAGAAATTGCTGACAAGACCGAAAAGTATAATAAATGTAAACAACTCTTGCAGGAT GAGAAAACAAAATGCAGTAAATATGCTGATGAACTTGCAAAAATGGAGCTGAAATGGAAA GAACAAGTGAAAATTGCTGAAAATGTAAAACTAGAATTAGCTGAAGTAGAGGACAATTAC AAACTTCAGTTGGCAGAGAAAGACAAAGAGATAAGTGGTCTGACTTCACATTTGGAAAAC CTCTCCAGAGGGAAGGAGCTTAAAAGGAGCATAGAAAATCAGGCAGAAAGGAAAATCGAA GGTCAGAATCCTCAGCAGATCTCACAGTGTCTTAACACAAACTTAGAGCAAAATGGTCAT GTGTCTGCAGTGCCAAATACACAACCAGTTCTGCAATATGGTAATCCTTACGCAACTCAG GAAACAAGAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATTCAAAGGCCACTTGTG AGAGTACCCTCTTGGGGACTAGAAGATAATGTTGTCTGCAGCCAGCCTGCTCGAAACCTT AGTAGACCTGATGGTTTAGAAGACCCTGAGGATAGTAAAGAAGATGAGAATGTGCCCACT GCTCCTGATCCTCCAAGTCAGCATTTACGAGGGCATGGAACAGGCTTTTGCTTTGATCCC AGCTTTGATGTTCAGAAGAAATGTCCACTCTGTGAGTTAATGTTCCCTCCCAACTATGAT CAGAGCAAGTTTGAAGAACATGTCGAAAGTCACTGGAAGGTGTGCCCCATGTGCAGCGAG CAGTTCCCTCCTGACTACGACCAGCAAGGCTTTGAAAGGCATGTCCAGACCCATTTTGAT CAGAATGTTTTAAATTTTGACTAGTTACTTTTTATTAGGAGTTAGTACAGTTTAGCAGTT GAAAAACAAAAACCCCACCTCAAGTAGACTACTAAGGAGACCACAAGGTGTCACCTTCAT GCACCCCCTACAGTACTTTTCTGACCAAGAGCTACTTTGAGTTTGGTGTTACTAGGGTCA GGGTCAGTGTGTGGCTTCTCCATAAATATAATTTTAACCTCTGTTAACCTTGCCAGCTTA AGAAGTTCTTGTGTGTTGTATCTTTATTCCCCATTTTGCAAAATTGTATGAATAAAGGAA ACAGGGACTATTTTAATGTTACCACACTAAAAAAAAAAATGTATGTGTAGTATGTTATTT AGAAGAATTTACAAGTTTCTGTTGACTTTGTTGATTGAGCATGACTACTAAAAATTATGT AATGAAATTGAATACAGAAACTTCCATAATTTAGCTCATGCAATGTTTTTTAACCCTCTT TAGAAAGGAGCTGCATGTAGAATGAGATCACATGCTTGCAAGATAGCAAATACCCTTTTT ATATTTGAAATGTTTGCTTTAGGAATTAATAGAAGGCATATTTTGCTAATTTTATGACTA AATTTAGAATGAACTGAATGATTATTTTTAAGCCATCGTAAAGTCATAATTCTGTCTCAT GGGGAAATAAGATGTGTCAGTATAGTTGTTTCATATTAAATGATCCTGCTAAACAGTGAT GGTTGTGGCATAAAACCACAGAAAATGTATTTGTGTCTTTTTTCACATTTTCCTGATGAG TATAACTTTGAAAAAGTGTTCTCTGTAAGTGATTAAATATGTAACATGTAAACCCAGATC AAACTAACATGTTCCTTATGTCTCTGCTTTGTGTCATATCCATTAACATTAAAGAGGACA CATTTTTAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCAGATCTGCATACTGCACGCTTGGAAAATGAGAAAGTAAAAAAGCAGTTAGCCGAT GCAGTGGCAGAGCTTAAACTAAGTGCTGTGAAAAAAGACCAGGAAAAGACTGAAACACTG GAACACGAACTGAGAAGAGAAGTTGAAGATCTGAAACTTCGTCTTCAGATGGCAGCAGAT CATTATAAAGAAAAATTCAAGGAATGCCAGAGACTCCAAAAACAAATAAATAAACTTTCA GACCAATCGGCTAATAACAATAGTGTCTTCACAAAGAAAGTTGGGAGTCAGCAGAAAGTG ATTGATGCTTCAATAAACACAGACCCAGCTACTGCTGCCTCTACTCTTGATGTAAAGCCA CCACCTTCTGCAGCTGAGACCGATTTTGACAGTCTGACCAAGGGACAAGTCTCTGAAATG ACCAAAGAAATTGCTGACAAGACCGAAAAGTATAATAAATGTAAACAACTCTTGCAGGAT GAGAAAACAAAATGCAGTAAATATGCTGATGAACTTGCAAAAATGGAGCTGAAATGGAAA GAACAAGTGAAAATTGCTGAAAATGTAAAACTAGAATTAGCTGAAGTAGAGGACAATTAC AAACTTCAGTTGGCAGAGAAAGACAAAGAGATAAGTGGTCTGACTTCACATTTGGAAAAC CTCTCCAGAGGGAAGGAGCTTAAAAGGAGCATAGAAAATCAGGCAGAAAGGAAAATCGAA GGTCAGAATCCTCAGCAGATCTCACAGTGTCTTAACACAAACTTAGAGCAAAATGGTCAT GTGTCTGCAGTGCCAAATACACAACCAGTTCTGCAATATGGTAATCCTTACGCAACTCAG GAAACAAGAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATTCAAAGGCCACTTGTG AGAGTACCCTCTTGGGGACTAGAAGATAATGTTGTCTGCAGCCAGCCTGCTCGAAACCTT AGTAGACCTGATGGTTTAGAAGACCCTGAGGATAGTAAAGAAGATGAGAATGTGCCCACT GCTCCTGATCCTCCAAGTCAGCATTTACGAGGGCATGGAACAGGCTTTTGCTTTGATCCC AGCTTTGATGTTCAGAAGAAATGTCCACTCTGTGAGTTAATGTTCCCTCCCAACTATGAT CAGAGCAAGTTTGAAGAACATGTCGAAAGTCACTGGAAGGTGTGCCCCATGTGCAGCGAG CAGTTCCCTCCTGACTACGACCAGCAAGGCTTTGAAAGGCATGTCCAGACCCATTTTGAT CAGAATGTTTTAAATTTTGACTAGTTACTTTTTATTAGGAGTTAGTACAGTTTAGCAGTT GAAAAACAAAAACCCCACCTCAAGTAGACTACTAAGGAGACCACAAGGTGTCACCTTCAT GCACCCCCTACAGTACTTTTCTGACCAAGAGCTACTTTGAGTTTGGTGTTACTAGGGTCA GGGTCAGTGTGTGGCTTCTCCATAAATATAATTTTAACCTCTGTTAACCTTGCCAGCTTA AGAAGTTCTTGTGTGTTGTATCTTTATTCCCCATTTTGCAAAATTGTATGAATAAAGGAA ACAGGGACTATTTTAATGTTACCACACTAAAAAAAAAAATGTATGTGTAGTATGTTATTT AGAAGAATTTACAAGTTTCTGTTGACTTTGTTGATTGAGCATGACTACTAAAAATTATGT AATGAAATTGAATACAGAAACTTCCATAATTTAGCTCATGCAATGTTTTTTAACCCTCTT TAGAAAGGAGCTGCATGTAGAATGAGATCACATGCTTGCAAGATAGCAAATACCCTTTTT ATATTTGAAATGTTTGCTTTAGGAATTAATAGAAGGCATATTTTGCTAATTTTATGACTA AATTTAGAATGAACTGAATGATTATTTTTAAGCCATCGTAAAGTCATAATTCTGTCTCAT GGGGAAATAAGATGTGTCAGTATAGTTGTTTCATATTAAATGATCCTGCTAAACAGTGAT GGTTGTGGCATAAAACCACAGAAAATGTATTTGTGTCTTTTTTCACATTTTCCTGATGAG TATAACTTTGAAAAAGTGTTCTCTGTAAGTGATTAAATATGTAACATGTAAACCCAGATC AAACTAACATGTTCCTTATGTCTCTGCTTTGTGTCATATCCATTAACATTAAAGAGGACA CATTTTTAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-108, + strand, RNAz p=0.58825 | |
| 1-108, - strand, RNAz p=0.58825 | |
| 1-108, + strand, RNAz p=0.620248 | |
| 1-108, - strand, RNAz p=0.620248 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-108, + strand, RNAz p=0.58825 | |
| 1-108, - strand, RNAz p=0.58825 | |
| 1-108, + strand, RNAz p=0.620248 | |
| 1-108, - strand, RNAz p=0.620248 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr4 (39638129-39638022) | |
| 1-108, gnl|canFam2|chr14 (43851248-43851450) | |
| 1-108, gnl|danRer3|chr19 (21520146-21519939) | |
| 1-108, gnl|echTel1|scaffold_120740 (533-735) | |
| 1-108, gnl|fr1|chrUn (24391357-24391573) | |
| 1-108, gnl|galGal2|chr2 (32123812-32124017) | |
| 1-108, gnl|hg17|chr7 (27604865-27605067) | |
| 1-108, gnl|Hg17|chr7 (27604988-27605095) | |
| 1-108, gnl|mm7|chr6 (52705321-52705523) | |
| 1-108, gnl|Mm7|chr6 (52705444-52705551) | |
| 1-108, gnl|monDom2|scaffold_57 (230465-230263) | |
| 1-108, gnl|oryCun1|scaffold_153336 (4375-4577) | |
| 1-108, gnl|panTro1|chr6 (28736215-28736417) | |
| 1-108, gnl|rheMac2|chr3 (98431849-98431647) | |
| 1-108, gnl|rn3|chr4 (81338523-81338725) | |
| 1-108, gnl|xenTro1|scaffold_29 (2309504-2309706) | |
| 245-373, gnl|bosTau2|chr4 (39637378-39637250) | |
| 245-373, gnl|Hg17|chr7 (27607177-27607305) | |
| 245-373, gnl|Mm7|chr6 (52707587-52707724) | |
| 476-603, gnl|bosTau2|chr4 (39632201-39632074) | |
| 476-603, gnl|Hg17|chr7 (27612822-27612949) | |
| 476-603, gnl|Mm7|chr6 (52714453-52714580) | |
| 849-1005, gnl|bosTau2|chr4 (39613838-39613682) | |
| 849-1005, gnl|Hg17|chr7 (27629747-27629903) | |
| 849-1005, gnl|Mm7|chr6 (52721581-52721731) | |
| 1081-1687, gnl|bosTau2|chr4 (39603186-39602582) | |
| 1081-1687, gnl|Hg17|chr7 (27641485-27642104) | |
| 1081-1687, gnl|Mm7|chr6 (52729241-52729844) | |
| 1688-2170, gnl|bosTau2|chr4 (39602549-39602060) | |
| 1688-2170, gnl|Hg17|chr7 (27642139-27642617) | |
| 1688-2170, gnl|Mm7|chr6 (52729879-52730336) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr4 (39638129-39638022) | |
| 1-108, gnl|canFam2|chr14 (43851248-43851450) | |
| 1-108, gnl|danRer3|chr19 (21520146-21519939) | |
| 1-108, gnl|echTel1|scaffold_120740 (533-735) | |
| 1-108, gnl|fr1|chrUn (24391357-24391573) | |
| 1-108, gnl|galGal2|chr2 (32123812-32124017) | |
| 1-108, gnl|hg17|chr7 (27604865-27605067) | |
| 1-108, gnl|Hg17|chr7 (27604988-27605095) | |
| 1-108, gnl|mm7|chr6 (52705321-52705523) | |
| 1-108, gnl|Mm7|chr6 (52705444-52705551) | |
| 1-108, gnl|monDom2|scaffold_57 (230465-230263) | |
| 1-108, gnl|oryCun1|scaffold_153336 (4375-4577) | |
| 1-108, gnl|panTro1|chr6 (28736215-28736417) | |
| 1-108, gnl|rheMac2|chr3 (98431849-98431647) | |
| 1-108, gnl|rn3|chr4 (81338523-81338725) | |
| 1-108, gnl|xenTro1|scaffold_29 (2309504-2309706) | |
| 245-373, gnl|bosTau2|chr4 (39637378-39637250) | |
| 245-373, gnl|Hg17|chr7 (27607177-27607305) | |
| 245-373, gnl|Mm7|chr6 (52707587-52707724) | |
| 476-603, gnl|bosTau2|chr4 (39632201-39632074) | |
| 476-603, gnl|Hg17|chr7 (27612822-27612949) | |
| 476-603, gnl|Mm7|chr6 (52714453-52714580) | |
| 849-1005, gnl|bosTau2|chr4 (39613838-39613682) | |
| 849-1005, gnl|Hg17|chr7 (27629747-27629903) | |
| 849-1005, gnl|Mm7|chr6 (52721581-52721731) | |
| 1081-1687, gnl|bosTau2|chr4 (39603186-39602582) | |
| 1081-1687, gnl|Hg17|chr7 (27641485-27642104) | |
| 1081-1687, gnl|Mm7|chr6 (52729241-52729844) | |
| 1688-2170, gnl|bosTau2|chr4 (39602549-39602060) | |
| 1688-2170, gnl|Hg17|chr7 (27642139-27642617) | |
| 1688-2170, gnl|Mm7|chr6 (52729879-52730336) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| ret (1.1586) | |
| fco (1.10046) | |
| tes (1.03907) | |
| lin (1.01922) | |
| cbl (0.918379) | |
| kid (0.908147) | |
| tbr (0.770891) | |
| cbe (0.717703) | |
| fhi (0.678311) | |
| liv (0.585137) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| clu (0.358938) | |
| eye (0.341006) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.1586) | |
| fco (1.10046) | |
| tes (1.03907) | |
| lin (1.01922) | |
| cbl (0.918379) | |
| kid (0.908147) | |
| tbr (0.770891) | |
| cbe (0.717703) | |
| fhi (0.678311) | |
| liv (0.585137) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| clu (0.358938) | |
| eye (0.341006) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |