Ss1.1-rsug30_j3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTGATCATAATGGCAGGTGAAGAAATTAATGAAGACTATCCAGTAGAAATTCATGAGT GTTTATCAACATTTGAGAATTCCATTGGTGCTGTGGATGAGATGCTGAAGACCATGATGT CCGTTTCTAGAAATGAGTTGTTACAGAAGTTGGACCCACTCGAACAAGCCAAAGTGGATT TAGTTTCTGCTTACACATTAAATTCAATGTTTTGGGTTTATTTGGCAACTCAGGGAGTCA ATCCTAAGGAACATCCAGTAAAGCAGGAATTGGAAAGGATCAGAGTATACATGAACAGAG TCAAGGAAATAACAGACAAGAAAAAGGCGGGCAAGCTGGACAGAGGCGCAGCTTCAAGAT TTGTAAAAAATGCCCTTTGGGAACCAAAACCTAAAAATGCATCCAAAGTTGCCAATAAAG GAAAAAGTAAAAATTAACCTTTTGATTTTGATGTACACATATTCAAAACGTACATCATTT TTATTGTTTTTCCACAAAATGGATGATGATAATGTGGCATTGTAAGGTTTAAATGTATTC TTTGTTGAATTCATGTATAAAATTTGCATTTTAAATTTGTAATGTTAAATACCTTTCCCT CTGAAAGATTAAGTTATCTTTATTGATTCCCCTATAGCACACTATGAGGTTTTTAACGTT GTGGTATATTTTATATTTTATAGTTTACCATCTGTCTTGACAAGATTCATATTTCCTTAT ATAGGTCAGTCTCTCAAGTGCCATTTTATAAGCAACTATAGCATTTAAGTTAAATGTTCT TTGTAAACATTTGTCTATTTTCGACGCATAATTTTATAAAGTATGCTGAAGTAAAATGTA TCTGTTTTCACTATGTAATGTTAAAGAAAGAATGAGATGACTTAAGTGTCCATTTTTTTC TATGTAGTTATTTCATATGCTTTCATGGTTTGGGGAATTACTGCTTTTTTGATATTTCAA GTATACAATTAAGACTTTAAGGTTATTCTTGGGTTTTTGGCACTATGCCACCATGTCTCC TTGAAAGTAAAATATATTCTCATTAACTTTAGATGGGAAATGAGGTTGTATATTGATGGC AGAGTTGTGGCTCAATGGCCAAACCCTATCAATAAAGCTGTAAATGTTGTGTAGCTGACC TGTTTGTTTTTCTCTTTTGAGTGAATTTGCCCTTGACATTAGGAAGATAGGTTTTAGAAA TCCGTAGGAATAGAGACATTCATATTTTTGTTCCTCATGCGTACGGGTGCCTACAGGTCT CTTGGCCTCAATTTTTCAGATTTTTTCACTGTGCATTTCTGAGGCTATAGCAAGTAGACA CAAGAGTTTTGGAACAACTTTCTGTTAAATCATGCCGCTTAAGCAGAGGAGTAATCCAAA GGAGATTACATTGTATTTATGTTCTGATTTATTTTCCTGGAGTATTTGTTACAGAGAATT CTAAATATTAAATTTTTTTTTTTTTTTTATGTCCGAGACCATGAATTTTACTTACATATC CTTAATGCTTTCAGTCTGTGAATCCACATCATTATATGTAGGAATGCCAAGTGCAATAAA GTGCTTTAATTTTTGAAAACGAAGTTGTTAAAATTTTCTGTGTGATTAATTCTCCATAAG TAACCTTGAATAAATGGGTTTCTTGATTTATGGTAGCAGATATTGGAAATGGTCTTAAAA TGTAATGGATTTTGTAAAGCATGTTGAACTCTTTCTGTGACATGTGAAGAGGAAGTCACG ATAGATGTGGAAAGTCTTCTGGCTCAAATATCAGACAATTTCTGAAGAGGAAGAACATTT ATAGTTAGTTATTCCATTCCTTTATTCAATCTTTGTCTCCTCAAATTTCTATTTTTTTTT AAGAAAGGAACGTCTTCATGAGAGAAATAAATGTTATTAAGATCGACGGTAGTGGCCTTG TGTTATTTGTTGCAGAGAAGATTATAACTTCACGTTTCTGTATGTTTTCTCAATTCATTA AGAAAAAAGTGAAATATGTCATACAGTTGCAGACAAGCAGTAGCCATATTACTGGTTTGT GAAAGTTCAACTCTGCATTCTCTTAAACTGGAGATTCTTAAGTGAATAATTCTTTAAGTG TTTCTTAGAAGAAGTAAAACACAGTTTGAGTGTATTCCATTTTATTATGTATAATTTTAA ATGCTTATTACTTAGCAAATAGTGCATTGAGTTGCTTATTTTTTGTTTATTCATTTCACA ACTATTTAATGACATTTATGTTGCTAAATACTGTGCTAGGTTCCAGATAGGATGACTCCA GCCTTTATTCTGTTTTAATAAAGTATTATGAAAAAACTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTGATCATAATGGCAGGTGAAGAAATTAATGAAGACTATCCAGTAGAAATTCATGAGT GTTTATCAACATTTGAGAATTCCATTGGTGCTGTGGATGAGATGCTGAAGACCATGATGT CCGTTTCTAGAAATGAGTTGTTACAGAAGTTGGACCCACTCGAACAAGCCAAAGTGGATT TAGTTTCTGCTTACACATTAAATTCAATGTTTTGGGTTTATTTGGCAACTCAGGGAGTCA ATCCTAAGGAACATCCAGTAAAGCAGGAATTGGAAAGGATCAGAGTATACATGAACAGAG TCAAGGAAATAACAGACAAGAAAAAGGCGGGCAAGCTGGACAGAGGCGCAGCTTCAAGAT TTGTAAAAAATGCCCTTTGGGAACCAAAACCTAAAAATGCATCCAAAGTTGCCAATAAAG GAAAAAGTAAAAATTAACCTTTTGATTTTGATGTACACATATTCAAAACGTACATCATTT TTATTGTTTTTCCACAAAATGGATGATGATAATGTGGCATTGTAAGGTTTAAATGTATTC TTTGTTGAATTCATGTATAAAATTTGCATTTTAAATTTGTAATGTTAAATACCTTTCCCT CTGAAAGATTAAGTTATCTTTATTGATTCCCCTATAGCACACTATGAGGTTTTTAACGTT GTGGTATATTTTATATTTTATAGTTTACCATCTGTCTTGACAAGATTCATATTTCCTTAT ATAGGTCAGTCTCTCAAGTGCCATTTTATAAGCAACTATAGCATTTAAGTTAAATGTTCT TTGTAAACATTTGTCTATTTTCGACGCATAATTTTATAAAGTATGCTGAAGTAAAATGTA TCTGTTTTCACTATGTAATGTTAAAGAAAGAATGAGATGACTTAAGTGTCCATTTTTTTC TATGTAGTTATTTCATATGCTTTCATGGTTTGGGGAATTACTGCTTTTTTGATATTTCAA GTATACAATTAAGACTTTAAGGTTATTCTTGGGTTTTTGGCACTATGCCACCATGTCTCC TTGAAAGTAAAATATATTCTCATTAACTTTAGATGGGAAATGAGGTTGTATATTGATGGC AGAGTTGTGGCTCAATGGCCAAACCCTATCAATAAAGCTGTAAATGTTGTGTAGCTGACC TGTTTGTTTTTCTCTTTTGAGTGAATTTGCCCTTGACATTAGGAAGATAGGTTTTAGAAA TCCGTAGGAATAGAGACATTCATATTTTTGTTCCTCATGCGTACGGGTGCCTACAGGTCT CTTGGCCTCAATTTTTCAGATTTTTTCACTGTGCATTTCTGAGGCTATAGCAAGTAGACA CAAGAGTTTTGGAACAACTTTCTGTTAAATCATGCCGCTTAAGCAGAGGAGTAATCCAAA GGAGATTACATTGTATTTATGTTCTGATTTATTTTCCTGGAGTATTTGTTACAGAGAATT CTAAATATTAAATTTTTTTTTTTTTTTTATGTCCGAGACCATGAATTTTACTTACATATC CTTAATGCTTTCAGTCTGTGAATCCACATCATTATATGTAGGAATGCCAAGTGCAATAAA GTGCTTTAATTTTTGAAAACGAAGTTGTTAAAATTTTCTGTGTGATTAATTCTCCATAAG TAACCTTGAATAAATGGGTTTCTTGATTTATGGTAGCAGATATTGGAAATGGTCTTAAAA TGTAATGGATTTTGTAAAGCATGTTGAACTCTTTCTGTGACATGTGAAGAGGAAGTCACG ATAGATGTGGAAAGTCTTCTGGCTCAAATATCAGACAATTTCTGAAGAGGAAGAACATTT ATAGTTAGTTATTCCATTCCTTTATTCAATCTTTGTCTCCTCAAATTTCTATTTTTTTTT AAGAAAGGAACGTCTTCATGAGAGAAATAAATGTTATTAAGATCGACGGTAGTGGCCTTG TGTTATTTGTTGCAGAGAAGATTATAACTTCACGTTTCTGTATGTTTTCTCAATTCATTA AGAAAAAAGTGAAATATGTCATACAGTTGCAGACAAGCAGTAGCCATATTACTGGTTTGT GAAAGTTCAACTCTGCATTCTCTTAAACTGGAGATTCTTAAGTGAATAATTCTTTAAGTG TTTCTTAGAAGAAGTAAAACACAGTTTGAGTGTATTCCATTTTATTATGTATAATTTTAA ATGCTTATTACTTAGCAAATAGTGCATTGAGTTGCTTATTTTTTGTTTATTCATTTCACA ACTATTTAATGACATTTATGTTGCTAAATACTGTGCTAGGTTCCAGATAGGATGACTCCA GCCTTTATTCTGTTTTAATAAAGTATTATGAAAAAACTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 2-149, gnl|bosTau2|chr11 (48021181-48021034) | |
| 2-149, gnl|canFam2|chr10 (70318933-70319089) | |
| 2-149, gnl|danRer3|chr13 (21848302-21848142) | |
| 2-149, gnl|dasNov1|scaffold_38373 (707-562) | |
| 2-149, gnl|echTel1|scaffold_210735 (8968-8818) | |
| 2-149, gnl|fr1|chrUn (99136651-99136791) | |
| 2-149, gnl|galGal2|chr3 (5974558-5974406) | |
| 2-149, gnl|hg17|chr2 (68185954-68186109) | |
| 2-149, gnl|Hg17|chr2 (68186103-68185956) | |
| 2-149, gnl|loxAfr1|scaffold_3726 (6421-6264) | |
| 2-149, gnl|mm7|chr11 (17214807-17214652) | |
| 2-149, gnl|Mm7|chr11 (17214656-17214803) | |
| 2-149, gnl|monDom2|scaffold_1 (34589866-34590022) | |
| 2-149, gnl|oryCun1|scaffold_203799 (56063-55911) | |
| 2-149, gnl|panTro1|chr12 (70432507-70432662) | |
| 2-149, gnl|rheMac2|chr13 (68313202-68313357) | |
| 2-149, gnl|rn3|chr14 (98179243-98179088) | |
| 2-149, gnl|tetNig1|chr17 (10229789-10229938) | |
| 2-149, gnl|xenTro1|scaffold_112 (1088639-1088796) | |
| 659-2065, gnl|bosTau2|chr11 (48016353-48014961) | |
| 659-2065, gnl|Hg17|chr2 (68181467-68180037) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-149, gnl|bosTau2|chr11 (48021181-48021034) | |
| 2-149, gnl|canFam2|chr10 (70318933-70319089) | |
| 2-149, gnl|danRer3|chr13 (21848302-21848142) | |
| 2-149, gnl|dasNov1|scaffold_38373 (707-562) | |
| 2-149, gnl|echTel1|scaffold_210735 (8968-8818) | |
| 2-149, gnl|fr1|chrUn (99136651-99136791) | |
| 2-149, gnl|galGal2|chr3 (5974558-5974406) | |
| 2-149, gnl|hg17|chr2 (68185954-68186109) | |
| 2-149, gnl|Hg17|chr2 (68186103-68185956) | |
| 2-149, gnl|loxAfr1|scaffold_3726 (6421-6264) | |
| 2-149, gnl|mm7|chr11 (17214807-17214652) | |
| 2-149, gnl|Mm7|chr11 (17214656-17214803) | |
| 2-149, gnl|monDom2|scaffold_1 (34589866-34590022) | |
| 2-149, gnl|oryCun1|scaffold_203799 (56063-55911) | |
| 2-149, gnl|panTro1|chr12 (70432507-70432662) | |
| 2-149, gnl|rheMac2|chr13 (68313202-68313357) | |
| 2-149, gnl|rn3|chr14 (98179243-98179088) | |
| 2-149, gnl|tetNig1|chr17 (10229789-10229938) | |
| 2-149, gnl|xenTro1|scaffold_112 (1088639-1088796) | |
| 659-2065, gnl|bosTau2|chr11 (48016353-48014961) | |
| 659-2065, gnl|Hg17|chr2 (68181467-68180037) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| tra (0.492368) | |
| amn (0.417711) | |
| fco (0.314416) | |
| spl (0.286369) | |
| ret (0.257467) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.492368) | |
| amn (0.417711) | |
| fco (0.314416) | |
| spl (0.286369) | |
| ret (0.257467) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |