Ss1.1-rsug30_n15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGAGTTCTTTTTCCTCCTAGTCCTAGTGTACTTTGTGATTGCTTGCATTTATGCTCAA TCATTGTGGCAGGCTATTAAGAAAGGAGGACCCATGCACATGGTTTTAAAGGTTCTGACA ACTGCATTGCTGTTACAAGCTGGTTCAGCTTTCGCTAATTACATTCATTTCTCCAGTTAC TCCAAAGATGGAATAGGGGTACCTTTTATGGGAAGTTGGGCAGAATTTTTTGACATCGCT TCCCAAATTCAAATGTTATACTTGCTTCTGAGCCTATGCATGGGCTGGACAATAGTCAGA ATGAAGAAGTCTCAGAGCAGACCCCTCCAGTGGGATTCCACTCCTGCGTCCACTGGCATT GCTGTATTCATTGTCATTACACAGAGTATTTTGCTGCTTTGGGAACAGTTTGAAGACACC AGTCCTCACAGCCACCATTCACACCACAACTTAGCAGGGATCCTTCTAATCGTTTTAAGA ATCTGCCTAGCACTGTCATTAGGCTGTGGACTCTACCAGATCATCACAGTGGAGAGAAGT ACACTCAAAAGGGAGTTCTACATCACATTTGCCAAAGGCTGTATCTTGTGGTTTTTATGC CATCCAGGTCTTGCATGCATTTCTTTCATTTTTAATGACTACCAAAGAGAAAAGGTCGTC ACAATAGGTGTTATCCTTTGCCAGTCTGTTTCCATGGTCATTCTCTACAGACTCTTTCTA TCCCACAGTCTATACTGGGAAGTTTCTTCACTTTCCTCTGTAACACTTCCACTGACCATA TCATCTGGACACAAAAGTCGGCCTCATTTCTGATACTTGATTTTCTTTAGAGGAAAAGTG AATTGATTTACCAGAGTGCAATAAGGAGCCAAATACAGTGACTCTTTTTTCATACTTTTG GTATGAAAAATTGAACAGAGAAAGCAGAGCATGTTATTTATACAACTGCATTTAAGCAGT CCCAAAACTGAAAAAAAGGTAATAAATGTTTTGAAATATACTTAATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGAGTTCTTTTTCCTCCTAGTCCTAGTGTACTTTGTGATTGCTTGCATTTATGCTCAA TCATTGTGGCAGGCTATTAAGAAAGGAGGACCCATGCACATGGTTTTAAAGGTTCTGACA ACTGCATTGCTGTTACAAGCTGGTTCAGCTTTCGCTAATTACATTCATTTCTCCAGTTAC TCCAAAGATGGAATAGGGGTACCTTTTATGGGAAGTTGGGCAGAATTTTTTGACATCGCT TCCCAAATTCAAATGTTATACTTGCTTCTGAGCCTATGCATGGGCTGGACAATAGTCAGA ATGAAGAAGTCTCAGAGCAGACCCCTCCAGTGGGATTCCACTCCTGCGTCCACTGGCATT GCTGTATTCATTGTCATTACACAGAGTATTTTGCTGCTTTGGGAACAGTTTGAAGACACC AGTCCTCACAGCCACCATTCACACCACAACTTAGCAGGGATCCTTCTAATCGTTTTAAGA ATCTGCCTAGCACTGTCATTAGGCTGTGGACTCTACCAGATCATCACAGTGGAGAGAAGT ACACTCAAAAGGGAGTTCTACATCACATTTGCCAAAGGCTGTATCTTGTGGTTTTTATGC CATCCAGGTCTTGCATGCATTTCTTTCATTTTTAATGACTACCAAAGAGAAAAGGTCGTC ACAATAGGTGTTATCCTTTGCCAGTCTGTTTCCATGGTCATTCTCTACAGACTCTTTCTA TCCCACAGTCTATACTGGGAAGTTTCTTCACTTTCCTCTGTAACACTTCCACTGACCATA TCATCTGGACACAAAAGTCGGCCTCATTTCTGATACTTGATTTTCTTTAGAGGAAAAGTG AATTGATTTACCAGAGTGCAATAAGGAGCCAAATACAGTGACTCTTTTTTCATACTTTTG GTATGAAAAATTGAACAGAGAAAGCAGAGCATGTTATTTATACAACTGCATTTAAGCAGT CCCAAAACTGAAAAAAAGGTAATAAATGTTTTGAAATATACTTAATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 418-534, + strand, RNAz p=0.641026 | |
| 692-811, - strand, RNAz p=0.973996 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 418-534, + strand, RNAz p=0.641026 | |
| 692-811, - strand, RNAz p=0.973996 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr12 (33847729-33847915) | |
| 1-186, gnl|canFam2|chr22 (48369522-48369731) | |
| 1-186, gnl|danRer3|chrNA (52489369-52489554) | |
| 1-186, gnl|echTel1|scaffold_324913 (50663-50453) | |
| 1-186, gnl|fr1|chrUn (137330527-137330731) | |
| 1-186, gnl|galGal2|chr1 (139065505-139065287) | |
| 1-186, gnl|hg17|chr13 (94069382-94069592) | |
| 1-186, gnl|Hg17|chr13 (94069410-94069596) | |
| 1-186, gnl|loxAfr1|scaffold_13259 (19973-19764) | |
| 1-186, gnl|mm7|chr14 (112556189-112556398) | |
| 1-186, gnl|Mm7|chr14 (112556216-112556402) | |
| 1-186, gnl|monDom2|scaffold_11 (58807799-58807586) | |
| 1-186, gnl|oryCun1|scaffold_207645 (952-742) | |
| 1-186, gnl|panTro1|chr14 (77098274-77098484) | |
| 1-186, gnl|rheMac2|chr17 (75025298-75025508) | |
| 1-186, gnl|rn3|chr15 (102960792-102961000) | |
| 1-186, gnl|tetNig1|chr3 (6744252-6744462) | |
| 1-186, gnl|xenTro1|scaffold_486 (678910-679109) | |
| 365-577, gnl|bosTau2|chr12 (33854273-33854485) | |
| 365-577, gnl|canFam2|chr22 (48376423-48376576) | |
| 365-577, gnl|danRer3|chrNA (52492585-52492745) | |
| 365-577, gnl|dasNov1|scaffold_180193 (1304-1151) | |
| 365-577, gnl|echTel1|scaffold_171017 (4628-4470) | |
| 365-577, gnl|fr1|chrUn (137331834-137332001) | |
| 365-577, gnl|galGal2|chr1 (139055361-139055202) | |
| 365-577, gnl|hg17|chr13 (94073337-94073494) | |
| 365-577, gnl|Hg17|chr13 (94073351-94073556) | |
| 365-577, gnl|loxAfr1|scaffold_13259 (11528-11375) | |
| 365-577, gnl|mm7|chr14 (112562614-112562765) | |
| 365-577, gnl|Mm7|chr14 (112562620-112562827) | |
| 365-577, gnl|monDom2|scaffold_11 (58801471-58801317) | |
| 365-577, gnl|panTro1|chr14 (77102746-77102903) | |
| 365-577, gnl|rheMac2|chr17 (75030498-75030655) | |
| 365-577, gnl|rn3|chr15 (102967702-102967853) | |
| 365-577, gnl|tetNig1|chr3 (6745502-6745658) | |
| 365-577, gnl|xenTro1|scaffold_486 (680365-680522) | |
| 653-1008, gnl|bosTau2|chr12 (33857351-33857713) | |
| 653-1008, gnl|Hg17|chr13 (94077266-94077631) | |
| 653-1008, gnl|Mm7|chr14 (112565229-112565571) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr12 (33847729-33847915) | |
| 1-186, gnl|canFam2|chr22 (48369522-48369731) | |
| 1-186, gnl|danRer3|chrNA (52489369-52489554) | |
| 1-186, gnl|echTel1|scaffold_324913 (50663-50453) | |
| 1-186, gnl|fr1|chrUn (137330527-137330731) | |
| 1-186, gnl|galGal2|chr1 (139065505-139065287) | |
| 1-186, gnl|hg17|chr13 (94069382-94069592) | |
| 1-186, gnl|Hg17|chr13 (94069410-94069596) | |
| 1-186, gnl|loxAfr1|scaffold_13259 (19973-19764) | |
| 1-186, gnl|mm7|chr14 (112556189-112556398) | |
| 1-186, gnl|Mm7|chr14 (112556216-112556402) | |
| 1-186, gnl|monDom2|scaffold_11 (58807799-58807586) | |
| 1-186, gnl|oryCun1|scaffold_207645 (952-742) | |
| 1-186, gnl|panTro1|chr14 (77098274-77098484) | |
| 1-186, gnl|rheMac2|chr17 (75025298-75025508) | |
| 1-186, gnl|rn3|chr15 (102960792-102961000) | |
| 1-186, gnl|tetNig1|chr3 (6744252-6744462) | |
| 1-186, gnl|xenTro1|scaffold_486 (678910-679109) | |
| 365-577, gnl|bosTau2|chr12 (33854273-33854485) | |
| 365-577, gnl|canFam2|chr22 (48376423-48376576) | |
| 365-577, gnl|danRer3|chrNA (52492585-52492745) | |
| 365-577, gnl|dasNov1|scaffold_180193 (1304-1151) | |
| 365-577, gnl|echTel1|scaffold_171017 (4628-4470) | |
| 365-577, gnl|fr1|chrUn (137331834-137332001) | |
| 365-577, gnl|galGal2|chr1 (139055361-139055202) | |
| 365-577, gnl|hg17|chr13 (94073337-94073494) | |
| 365-577, gnl|Hg17|chr13 (94073351-94073556) | |
| 365-577, gnl|loxAfr1|scaffold_13259 (11528-11375) | |
| 365-577, gnl|mm7|chr14 (112562614-112562765) | |
| 365-577, gnl|Mm7|chr14 (112562620-112562827) | |
| 365-577, gnl|monDom2|scaffold_11 (58801471-58801317) | |
| 365-577, gnl|panTro1|chr14 (77102746-77102903) | |
| 365-577, gnl|rheMac2|chr17 (75030498-75030655) | |
| 365-577, gnl|rn3|chr15 (102967702-102967853) | |
| 365-577, gnl|tetNig1|chr3 (6745502-6745658) | |
| 365-577, gnl|xenTro1|scaffold_486 (680365-680522) | |
| 653-1008, gnl|bosTau2|chr12 (33857351-33857713) | |
| 653-1008, gnl|Hg17|chr13 (94077266-94077631) | |
| 653-1008, gnl|Mm7|chr14 (112565229-112565571) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eye (0.170503) | |
| liv (0.146284) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| liv (0.146284) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| nbm (0.0993246) |