Non-Coding RNA Search

Ss1.1-rtes01_d21.5

Sequence:


               
               TTCCTCTTAAGAGTGATCACCAGCAAAATGGCAAGCACAGTATCATACATGTGACCAATT
GCTGAATACGATTGCTCCAGAGCAAAATCTCTTCCATGTAGGAAGATGGAAGGTAGAATG
TATGTTATACATACCTGTTTGTACAGAAACTAGCACCTGTCACACACAGCTGGTACCAAG
AGTTAATTAACGCCATACCTTTTCCTTCTTGAAATATCTTTCTCTAAGACCAGTGCCTTT
TCTGTGCTGAACTTCTTCAGAAAACCTCCAATTGTAGATGTTGATTTGAATTCATAGACG
TGATATCCGAGAAACTGTTTTGTAATTCTCAAAAGATTTGAACATGCATCACTTAATTAA
AGAGTCACACCAGGAAGTGAGCAGGGCAGCTACTATTCTCTCTATTTAAAAAACCAAGCC
TTAGTGATATTCAGCCACGTGCCTGGAATTATACACCAAGTCGGTAGAGCCAGATGAGGA
CCCCAGGCTTCCTAGAGGCCATGCCCATTGCATGCCGATCTGTGCAACCTCATCAAGACC
CCTACAGCCATTTCCCACCAGTAGGCCCCAGATAGAACAAAAAAGGAATTTTCTTTTTCA
GAGCCATCTAGAAAACCCTAAACCCTCTTATTAAGAGAAAACTGGGAGAACAAATGTGCA
AGGGGTTGGGATTTTATGGATGTGATCTATTTGGAAGGAGCTGTAATGTCAGGTGGTAGC
AGGGAGGGGACATTGTATTTGGGTTTTTAAGTTTTTAAAGGACATTGTTTTAATCTGTAT
TGTGCCAAAGTTGTGTCATTGTTCAATGCCAAACCTCTGAATGCATAACCTGTCAAATAC
CTTAATTCAAGGTATTTTCTCTGTCCATTTCTGTGCTTTTTCTGTGGCTTCTGTGATTTT
CTTTCTAGCCAAAGGAGAGCTTGTATTACTGACTGTGCATCTTGGTTGCTTTCTGCTTCT
GATTTTAGTAAAGGAAGCCTTAGAAATTGAATCCTCAGTGGGTCCTGTATTTATACTTTT
GGCTTGAAGCCATATTTGTATATAATGATGCTTTTTTAAAATGCTTAGAATACTATTTAT
TTCTCAAGTGTATATAATGTATAAAAACAAATATATGGTTAGTTTCTACTTGACAATTAA
CTGATTTCAAGATTAAAAAATTTTAATAGTAAAATAATAAAAATCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCTTAAGAGTGATCACCAGCAAAATGGCAAGCACAGTATCATACATGTGACCAATT
GCTGAATACGATTGCTCCAGAGCAAAATCTCTTCCATGTAGGAAGATGGAAGGTAGAATG
TATGTTATACATACCTGTTTGTACAGAAACTAGCACCTGTCACACACAGCTGGTACCAAG
AGTTAATTAACGCCATACCTTTTCCTTCTTGAAATATCTTTCTCTAAGACCAGTGCCTTT
TCTGTGCTGAACTTCTTCAGAAAACCTCCAATTGTAGATGTTGATTTGAATTCATAGACG
TGATATCCGAGAAACTGTTTTGTAATTCTCAAAAGATTTGAACATGCATCACTTAATTAA
AGAGTCACACCAGGAAGTGAGCAGGGCAGCTACTATTCTCTCTATTTAAAAAACCAAGCC
TTAGTGATATTCAGCCACGTGCCTGGAATTATACACCAAGTCGGTAGAGCCAGATGAGGA
CCCCAGGCTTCCTAGAGGCCATGCCCATTGCATGCCGATCTGTGCAACCTCATCAAGACC
CCTACAGCCATTTCCCACCAGTAGGCCCCAGATAGAACAAAAAAGGAATTTTCTTTTTCA
GAGCCATCTAGAAAACCCTAAACCCTCTTATTAAGAGAAAACTGGGAGAACAAATGTGCA
AGGGGTTGGGATTTTATGGATGTGATCTATTTGGAAGGAGCTGTAATGTCAGGTGGTAGC
AGGGAGGGGACATTGTATTTGGGTTTTTAAGTTTTTAAAGGACATTGTTTTAATCTGTAT
TGTGCCAAAGTTGTGTCATTGTTCAATGCCAAACCTCTGAATGCATAACCTGTCAAATAC
CTTAATTCAAGGTATTTTCTCTGTCCATTTCTGTGCTTTTTCTGTGGCTTCTGTGATTTT
CTTTCTAGCCAAAGGAGAGCTTGTATTACTGACTGTGCATCTTGGTTGCTTTCTGCTTCT
GATTTTAGTAAAGGAAGCCTTAGAAATTGAATCCTCAGTGGGTCCTGTATTTATACTTTT
GGCTTGAAGCCATATTTGTATATAATGATGCTTTTTTAAAATGCTTAGAATACTATTTAT
TTCTCAAGTGTATATAATGTATAAAAACAAATATATGGTTAGTTTCTACTTGACAATTAA
CTGATTTCAAGATTAAAAAATTTTAATAGTAAAATAATAAAAATCTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               51-169, + strand, RNAz p=0.81125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-169, + strand, RNAz p=0.81125

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006033, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006033, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               51-769, gnl|bosTau2|chr24 (39312182-39311487)
               

               
               51-769, gnl|canFam2|chr7 (82252702-82251915)
               

               
               51-769, gnl|dasNov1|scaffold_115764 (1670-2466)
               

               
               51-769, gnl|hg17|chr18 (45371570-45372387)
               

               
               51-769, gnl|Hg17|chr18 (45371833-45372501)
               

               
               51-769, gnl|loxAfr1|scaffold_125507 (1350-588)
               

               
               51-769, gnl|mm7|chr18 (75335939-75335190)
               

               
               51-769, gnl|Mm7|chr18 (75335748-75335083)
               

               
               51-769, gnl|oryCun1|scaffold_208489 (43425-42695)
               

               
               51-769, gnl|panTro1|chr17 (41847986-41848795)
               

               
               51-769, gnl|rheMac2|chr18 (42629539-42630338)
               

               
               51-769, gnl|rn3|chr18 (71867782-71867067)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-769, gnl|bosTau2|chr24 (39312182-39311487)
               

               
               51-769, gnl|canFam2|chr7 (82252702-82251915)
               

               
               51-769, gnl|dasNov1|scaffold_115764 (1670-2466)
               

               
               51-769, gnl|hg17|chr18 (45371570-45372387)
               

               
               51-769, gnl|Hg17|chr18 (45371833-45372501)
               

               
               51-769, gnl|loxAfr1|scaffold_125507 (1350-588)
               

               
               51-769, gnl|mm7|chr18 (75335939-75335190)
               

               
               51-769, gnl|Mm7|chr18 (75335748-75335083)
               

               
               51-769, gnl|oryCun1|scaffold_208489 (43425-42695)
               

               
               51-769, gnl|panTro1|chr17 (41847986-41848795)
               

               
               51-769, gnl|rheMac2|chr18 (42629539-42630338)
               

               
               51-769, gnl|rn3|chr18 (71867782-71867067)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sug (0.636456)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.636456)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	51-769, gnl\|bosTau2\|chr24 (39312182-39311487)
	51-769, gnl\|canFam2\|chr7 (82252702-82251915)
	51-769, gnl\|dasNov1\|scaffold_115764 (1670-2466)
	51-769, gnl\|hg17\|chr18 (45371570-45372387)
	51-769, gnl\|Hg17\|chr18 (45371833-45372501)
	51-769, gnl\|loxAfr1\|scaffold_125507 (1350-588)
	51-769, gnl\|mm7\|chr18 (75335939-75335190)
	51-769, gnl\|Mm7\|chr18 (75335748-75335083)
	51-769, gnl\|oryCun1\|scaffold_208489 (43425-42695)
	51-769, gnl\|panTro1\|chr17 (41847986-41848795)
	51-769, gnl\|rheMac2\|chr18 (42629539-42630338)
	51-769, gnl\|rn3\|chr18 (71867782-71867067)

	sug (0.636456)
	lun (0.300978)
	cte (0.29274)
	tes (0.207814)
	aor (0.195274)
	thg (0.126791)
	tra (0.123092)