Non-Coding RNA Search

Ss1.1-rtes01_f23.5

Sequence:


               
               GTACTTTTTATTTTGGGAGCCAGAGTATGATTTGGGGGAACGAAATGTATTAGTCCTACT
GCAGTGCAAATTTTAACTATCTTTTCTCATGAGTCCATCTTTGATTCTTTCTTTATATGG
TAGAGGATTTGGAGTCTTCTGTTTCTAGGCACGTTCTTACCGTCCGTTATCCTTAAATAT
TGATAAACTCTTCCAGACACCAAAGAACACATTTGCTTAAATAAGTGTCTGAACAGAAGC
AAGAAAAAAAACACTGGTATTTTTATGTGCGTATTCAATATCATATAAAATATAAAACCT
ATATTTTAACTTAGTAAAATATTTTACTACTTCTGTGCTTTAGACAGAGTGTTGCATCCA
GGATACAATGAATGAGCATTTTTCTTGAGTCTCGATTCCCCCTTTTTATTCCTTAAGGGC
AGCTTGGAGCCTTTACTCCCCTGAAGAGTTTTTGCCACTAGAATCGTCGCTGGTCATTAA
TCTTAGGTCATTTCCCCGCCAGTAATCTCTCTTAGGTTAACATATTTTTTTGTAAACATT
TAGCCTCTCCTTGTGTTAAGCTGACATTACCTAGCCTCATTTTGAAATTTAATGCTATCA
TAAAAATGAGAAGCACTTATTATTTATTTTTAAAGTAACCACAGAAGTCCATGCCAATAA
TGAATAGAAAAAGTATTTATGCATTTGGAATTCACTAGGTTCTTAGGGAAGAAAAGCAGT
CACCGTTTTATTAGGTTTTAGGATATTTATAAGGTTTGAACAGATTCTGCCTCCTCTTTC
TTCCCTTCTCTGCATCTTCTCTTCTTGAAAATAAAAGAAAAATCAAATTTGTTCACATTA
GAATTTCTCAGCACATAAATCTGTTTTCAGAATAAATTATGTATTGTATAAACTTTCTCC
ATGATGAAATAGTCAAGGACTAGAATCTGTAATATTTTAATGTAAGATTACTTGTTAAGA
CTACTACGAGTGGATGTGAACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTTTTTATTTTGGGAGCCAGAGTATGATTTGGGGGAACGAAATGTATTAGTCCTACT
GCAGTGCAAATTTTAACTATCTTTTCTCATGAGTCCATCTTTGATTCTTTCTTTATATGG
TAGAGGATTTGGAGTCTTCTGTTTCTAGGCACGTTCTTACCGTCCGTTATCCTTAAATAT
TGATAAACTCTTCCAGACACCAAAGAACACATTTGCTTAAATAAGTGTCTGAACAGAAGC
AAGAAAAAAAACACTGGTATTTTTATGTGCGTATTCAATATCATATAAAATATAAAACCT
ATATTTTAACTTAGTAAAATATTTTACTACTTCTGTGCTTTAGACAGAGTGTTGCATCCA
GGATACAATGAATGAGCATTTTTCTTGAGTCTCGATTCCCCCTTTTTATTCCTTAAGGGC
AGCTTGGAGCCTTTACTCCCCTGAAGAGTTTTTGCCACTAGAATCGTCGCTGGTCATTAA
TCTTAGGTCATTTCCCCGCCAGTAATCTCTCTTAGGTTAACATATTTTTTTGTAAACATT
TAGCCTCTCCTTGTGTTAAGCTGACATTACCTAGCCTCATTTTGAAATTTAATGCTATCA
TAAAAATGAGAAGCACTTATTATTTATTTTTAAAGTAACCACAGAAGTCCATGCCAATAA
TGAATAGAAAAAGTATTTATGCATTTGGAATTCACTAGGTTCTTAGGGAAGAAAAGCAGT
CACCGTTTTATTAGGTTTTAGGATATTTATAAGGTTTGAACAGATTCTGCCTCCTCTTTC
TTCCCTTCTCTGCATCTTCTCTTCTTGAAAATAAAAGAAAAATCAAATTTGTTCACATTA
GAATTTCTCAGCACATAAATCTGTTTTCAGAATAAATTATGTATTGTATAAACTTTCTCC
ATGATGAAATAGTCAAGGACTAGAATCTGTAATATTTTAATGTAAGATTACTTGTTAAGA
CTACTACGAGTGGATGTGAACTAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-492, gnl|bosTau2|chr16 (5087509-5087990)
               

               
               2-492, gnl|Hg17|chr1 (189952226-189952724)
               

               
               2-492, gnl|Mm7|chr1 (143534043-143533567)
               


               
               536-984, gnl|bosTau2|chr16 (5088011-5088457)
               

               
               536-984, gnl|Hg17|chr1 (189952781-189953227)
               

               
               536-984, gnl|Mm7|chr1 (143533511-143533024)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-492, gnl|bosTau2|chr16 (5087509-5087990)
               

               
               2-492, gnl|Hg17|chr1 (189952226-189952724)
               

               
               2-492, gnl|Mm7|chr1 (143534043-143533567)
               


               
               536-984, gnl|bosTau2|chr16 (5088011-5088457)
               

               
               536-984, gnl|Hg17|chr1 (189952781-189953227)
               

               
               536-984, gnl|Mm7|chr1 (143533511-143533024)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	2-492, gnl\|bosTau2\|chr16 (5087509-5087990)
	2-492, gnl\|Hg17\|chr1 (189952226-189952724)
	2-492, gnl\|Mm7\|chr1 (143534043-143533567)

	536-984, gnl\|bosTau2\|chr16 (5088011-5088457)
	536-984, gnl\|Hg17\|chr1 (189952781-189953227)
	536-984, gnl\|Mm7\|chr1 (143533511-143533024)

	tes (0.207814)
	kid (0.129735)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)