Non-Coding RNA Search

Ss1.1-rtes02_c10.5

Sequence:


               
               ATTTTAATCAAATGATTAGAGCTTAAATATTTGCAGGCAATTTCCCTTAAGAAATGAAAA
AAAGTACACATTCACTTAGATTCTTCAGAAAATTTAATGGTGCCAGTTTCTACTGGGTAT
TTCCTCATCAAAATGTTTCAGAGTTTTAGGGTGATGGAAGGGAATTTCAGTGGGTTTGGG
GAGACTCTAGGGTGTGGAGAATGACAGGGAGAGGATAAGGCAAGGGTTTGCTTAAGAGCT
AAGCAAAAGCATAATTTGTCTAAAAATACCCATGAAAAAGTTTGGGAATTGAAATTTAAA
CTCCTAGAATATTAGTTAAGGAAACCAAAATTAAGAAATCATACTCTTGCCAACACAGTT
ACAGCCTAATATTATTCAGGGGAGAAGGTCCTTAGAGTTTTATAATTCTGATTCTGATTT
TTTTTTTTTATTATTTTCTTTAACTTTGGAAACCTTACAAATTGAAACTGTCTTTAACCT
TTTTAAATTATTTGAGCATTATTTAGATATTGTGAGCTTGAAACAAAGAGGTTTCCAGAC
AACCTCTTTACCATAAACCGATCCCTGATAAACCATGGCTCTTTTTTTCAGTGTTCAGAG
CTTATAAGCAGTTTCTTGAGTGGCCATTTTCCTGGTTTAGCCCTAGCACTTGACTGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAATCAAATGATTAGAGCTTAAATATTTGCAGGCAATTTCCCTTAAGAAATGAAAA
AAAGTACACATTCACTTAGATTCTTCAGAAAATTTAATGGTGCCAGTTTCTACTGGGTAT
TTCCTCATCAAAATGTTTCAGAGTTTTAGGGTGATGGAAGGGAATTTCAGTGGGTTTGGG
GAGACTCTAGGGTGTGGAGAATGACAGGGAGAGGATAAGGCAAGGGTTTGCTTAAGAGCT
AAGCAAAAGCATAATTTGTCTAAAAATACCCATGAAAAAGTTTGGGAATTGAAATTTAAA
CTCCTAGAATATTAGTTAAGGAAACCAAAATTAAGAAATCATACTCTTGCCAACACAGTT
ACAGCCTAATATTATTCAGGGGAGAAGGTCCTTAGAGTTTTATAATTCTGATTCTGATTT
TTTTTTTTTATTATTTTCTTTAACTTTGGAAACCTTACAAATTGAAACTGTCTTTAACCT
TTTTAAATTATTTGAGCATTATTTAGATATTGTGAGCTTGAAACAAAGAGGTTTCCAGAC
AACCTCTTTACCATAAACCGATCCCTGATAAACCATGGCTCTTTTTTTCAGTGTTCAGAG
CTTATAAGCAGTTTCTTGAGTGGCCATTTTCCTGGTTTAGCCCTAGCACTTGACTGTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               424-541, - strand, RNAz p=0.895686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-541, - strand, RNAz p=0.895686

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-658, gnl|bosTau2|chr10 (8818692-8818027)
               

               
               1-658, gnl|canFam2|chr30 (32799447-32800272)
               

               
               1-658, gnl|dasNov1|scaffold_27509 (11668-12469)
               

               
               1-658, gnl|hg17|chr15 (63524577-63525426)
               

               
               1-658, gnl|Hg17|chr15 (63525520-63524866)
               

               
               1-658, gnl|loxAfr1|scaffold_24608 (23920-23140)
               

               
               1-658, gnl|mm7|chr9 (65112076-65111320)
               

               
               1-658, gnl|Mm7|chr9 (65111228-65111827)
               

               
               1-658, gnl|monDom2|scaffold_12 (47725097-47724188)
               

               
               1-658, gnl|oryCun1|scaffold_177693 (23441-24259)
               

               
               1-658, gnl|panTro1|chr16 (64012905-64013753)
               

               
               1-658, gnl|rheMac2|chr7 (43935059-43935906)
               

               
               1-658, gnl|rn3|chr8 (69349506-69348737)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-658, gnl|bosTau2|chr10 (8818692-8818027)
               

               
               1-658, gnl|canFam2|chr30 (32799447-32800272)
               

               
               1-658, gnl|dasNov1|scaffold_27509 (11668-12469)
               

               
               1-658, gnl|hg17|chr15 (63524577-63525426)
               

               
               1-658, gnl|Hg17|chr15 (63525520-63524866)
               

               
               1-658, gnl|loxAfr1|scaffold_24608 (23920-23140)
               

               
               1-658, gnl|mm7|chr9 (65112076-65111320)
               

               
               1-658, gnl|Mm7|chr9 (65111228-65111827)
               

               
               1-658, gnl|monDom2|scaffold_12 (47725097-47724188)
               

               
               1-658, gnl|oryCun1|scaffold_177693 (23441-24259)
               

               
               1-658, gnl|panTro1|chr16 (64012905-64013753)
               

               
               1-658, gnl|rheMac2|chr7 (43935059-43935906)
               

               
               1-658, gnl|rn3|chr8 (69349506-69348737)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-658, gnl\|bosTau2\|chr10 (8818692-8818027)
	1-658, gnl\|canFam2\|chr30 (32799447-32800272)
	1-658, gnl\|dasNov1\|scaffold_27509 (11668-12469)
	1-658, gnl\|hg17\|chr15 (63524577-63525426)
	1-658, gnl\|Hg17\|chr15 (63525520-63524866)
	1-658, gnl\|loxAfr1\|scaffold_24608 (23920-23140)
	1-658, gnl\|mm7\|chr9 (65112076-65111320)
	1-658, gnl\|Mm7\|chr9 (65111228-65111827)
	1-658, gnl\|monDom2\|scaffold_12 (47725097-47724188)
	1-658, gnl\|oryCun1\|scaffold_177693 (23441-24259)
	1-658, gnl\|panTro1\|chr16 (64012905-64013753)
	1-658, gnl\|rheMac2\|chr7 (43935059-43935906)
	1-658, gnl\|rn3\|chr8 (69349506-69348737)