Non-Coding RNA Search

Ss1.1-rtes02_d17.5

Sequence:


               
               ATTGCTCCAAAGCTTGAATTTTCTACAACCTCGGTGATTACCGAATGTCTGATAAGTTCA
AGGAAGTGCCGCACTCAGGATAAATTTACTTACCATACGGCTCCAGTAGAGAAATCACAC
AGCAGACTGCAAAGCAGAACATCGAGACCCCCGAAGAAAAAATCCAAGTCACCCGAGAGA
AGTAAATATTGCATAAATGCAAAAAACTACGAACAGCCTACAATTTCTTCAAAATCACAC
TCTCCATCTCCTTACACGAAAAGACGCATGTGTGAGCTGTCTGAAGACACCAGGCGGCGG
CTGGCCCATTTAAATCTTGGACCCTATGAATTCAAAAAAGAAACAGATAAGCCTCCGTTT
GTGATTAGACATGTTGATCCCCCAAGTCCTAGGACTGATGCTTTATTTGGATCTTCTGGC
AGAGACTGTGAAAGAGATGGATGGTCCAGGATGCACAATGATCATTCTCATCTTGGGTGC
TACCGACCCAAGGATTATAAGGTTATCAGAACACCTCATGGGAGAGACTTCGACGACTCT
TTGGAAAGGTGTGATGACTATTTGAGCTCCAGGTCATGCAGCAAGCCCCAGCATTCGGCC
AGGACCCTACTCGTTCATTCAGCACCCTCGACAATGCCGAAGCACTCTCCAAGCCCTGTG
TTAAATCGCGCTTCTCTCAGGGAAAGATTCCATTCTGATTGGTGTTCACCTTCAAACTGC
GATGAGATCCATGACCGGGTAAAAAATGTCTTGAAATCACATCAGGCTCATCAAAGACAT
TCATACGATGAGAGAGACCCAGAGAAAGAAGATGAACCGGAACTGAAAAGAGGTCTTTTA
TATAGAGACTCTGCCTATGACAGCGACCCAGAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCTCCAAAGCTTGAATTTTCTACAACCTCGGTGATTACCGAATGTCTGATAAGTTCA
AGGAAGTGCCGCACTCAGGATAAATTTACTTACCATACGGCTCCAGTAGAGAAATCACAC
AGCAGACTGCAAAGCAGAACATCGAGACCCCCGAAGAAAAAATCCAAGTCACCCGAGAGA
AGTAAATATTGCATAAATGCAAAAAACTACGAACAGCCTACAATTTCTTCAAAATCACAC
TCTCCATCTCCTTACACGAAAAGACGCATGTGTGAGCTGTCTGAAGACACCAGGCGGCGG
CTGGCCCATTTAAATCTTGGACCCTATGAATTCAAAAAAGAAACAGATAAGCCTCCGTTT
GTGATTAGACATGTTGATCCCCCAAGTCCTAGGACTGATGCTTTATTTGGATCTTCTGGC
AGAGACTGTGAAAGAGATGGATGGTCCAGGATGCACAATGATCATTCTCATCTTGGGTGC
TACCGACCCAAGGATTATAAGGTTATCAGAACACCTCATGGGAGAGACTTCGACGACTCT
TTGGAAAGGTGTGATGACTATTTGAGCTCCAGGTCATGCAGCAAGCCCCAGCATTCGGCC
AGGACCCTACTCGTTCATTCAGCACCCTCGACAATGCCGAAGCACTCTCCAAGCCCTGTG
TTAAATCGCGCTTCTCTCAGGGAAAGATTCCATTCTGATTGGTGTTCACCTTCAAACTGC
GATGAGATCCATGACCGGGTAAAAAATGTCTTGAAATCACATCAGGCTCATCAAAGACAT
TCATACGATGAGAGAGACCCAGAGAAAGAAGATGAACCGGAACTGAAAAGAGGTCTTTTA
TATAGAGACTCTGCCTATGACAGCGACCCAGAGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55586323|ref|XP_513154.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55586323|ref|XP_513154.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-315, - strand, RNAz p=0.811329

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-315, - strand, RNAz p=0.811329

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               77-374, gnl|bosTau2|chr3 (69974435-69974732)
               

               
               77-374, gnl|canFam2|chr15 (15540692-15540491)
               

               
               77-374, gnl|dasNov1|scaffold_55943 (2459-2258)
               

               
               77-374, gnl|echTel1|scaffold_170492 (2868-2667)
               

               
               77-374, gnl|fr1|chrUn (47935033-47935214)
               

               
               77-374, gnl|galGal2|chr8 (22900432-22900633)
               

               
               77-374, gnl|hg17|chr1 (48577038-48577239)
               

               
               77-374, gnl|Hg17|chr1 (48577338-48577041)
               

               
               77-374, gnl|loxAfr1|scaffold_3050 (5914-5713)
               

               
               77-374, gnl|mm7|chr4 (111155739-111155538)
               

               
               77-374, gnl|Mm7|chr4 (111155437-111155734)
               

               
               77-374, gnl|monDom2|scaffold_70 (4465839-4465638)
               

               
               77-374, gnl|oryCun1|scaffold_123943 (5114-5315)
               

               
               77-374, gnl|panTro1|chr1 (46794385-46794586)
               

               
               77-374, gnl|rheMac2|chr1 (51286619-51286820)
               

               
               77-374, gnl|rn3|chr5 (133316863-133316662)
               

               
               77-374, gnl|xenTro1|scaffold_14 (1040970-1040766)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-374, gnl|bosTau2|chr3 (69974435-69974732)
               

               
               77-374, gnl|canFam2|chr15 (15540692-15540491)
               

               
               77-374, gnl|dasNov1|scaffold_55943 (2459-2258)
               

               
               77-374, gnl|echTel1|scaffold_170492 (2868-2667)
               

               
               77-374, gnl|fr1|chrUn (47935033-47935214)
               

               
               77-374, gnl|galGal2|chr8 (22900432-22900633)
               

               
               77-374, gnl|hg17|chr1 (48577038-48577239)
               

               
               77-374, gnl|Hg17|chr1 (48577338-48577041)
               

               
               77-374, gnl|loxAfr1|scaffold_3050 (5914-5713)
               

               
               77-374, gnl|mm7|chr4 (111155739-111155538)
               

               
               77-374, gnl|Mm7|chr4 (111155437-111155734)
               

               
               77-374, gnl|monDom2|scaffold_70 (4465839-4465638)
               

               
               77-374, gnl|oryCun1|scaffold_123943 (5114-5315)
               

               
               77-374, gnl|panTro1|chr1 (46794385-46794586)
               

               
               77-374, gnl|rheMac2|chr1 (51286619-51286820)
               

               
               77-374, gnl|rn3|chr5 (133316863-133316662)
               

               
               77-374, gnl|xenTro1|scaffold_14 (1040970-1040766)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (1.03907)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)

	77-374, gnl\|bosTau2\|chr3 (69974435-69974732)
	77-374, gnl\|canFam2\|chr15 (15540692-15540491)
	77-374, gnl\|dasNov1\|scaffold_55943 (2459-2258)
	77-374, gnl\|echTel1\|scaffold_170492 (2868-2667)
	77-374, gnl\|fr1\|chrUn (47935033-47935214)
	77-374, gnl\|galGal2\|chr8 (22900432-22900633)
	77-374, gnl\|hg17\|chr1 (48577038-48577239)
	77-374, gnl\|Hg17\|chr1 (48577338-48577041)
	77-374, gnl\|loxAfr1\|scaffold_3050 (5914-5713)
	77-374, gnl\|mm7\|chr4 (111155739-111155538)
	77-374, gnl\|Mm7\|chr4 (111155437-111155734)
	77-374, gnl\|monDom2\|scaffold_70 (4465839-4465638)
	77-374, gnl\|oryCun1\|scaffold_123943 (5114-5315)
	77-374, gnl\|panTro1\|chr1 (46794385-46794586)
	77-374, gnl\|rheMac2\|chr1 (51286619-51286820)
	77-374, gnl\|rn3\|chr5 (133316863-133316662)
	77-374, gnl\|xenTro1\|scaffold_14 (1040970-1040766)