Ss1.1-rtes02_g13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCCTGCGAACTGCCTGTGAGACAGCTGGCTCCACCATGGGAAATGAGCCCAGTAACCCA ATGGAGATGTGCTCCCAGTTTGACCAAAACGAAATTAAACAGCTGAGCAAGCGGTTTAAG AAGGTGGACTTGGACAGTTCGGGCACTCTGACTATGAAGGAGCTCATGTCCCTGCCGGGG CTGCAGGTGAACCCGTTGGTGCAGCGAGTGTTCGACATTTTCGACACAGACGGCAACGGA GAAGTGGACTTCAAGGAATTCCTCGTGGGGACCTCCCAGTTCAGTGTCAAGGGCGACAAG GAGCAGAAGCTGAGGTTTGCTTTCAGCATCTATGACATGGACAAAGACGGCTACATTTCC AACGGGGAGCTCTTCCAGGTGCTAAACATGATGGTGGGAGACAACCTGAAAGACTGGCAG TTACAGCAGCTGGTGGACAAAACCATCATCGCCCTGGACAAGGATGGAGATGGGAAAATA TCCTTCCACGAATTCTGCGCTGTGGCCAGAAACCTGAAGGTCCACGAGAAATTGGGGGTA ATTGTGTGACCGTCTATAAGAGCACCACCCAACAACAACTTTTTCTTTCTTCTCTGTATC TTTAAACATCAGCTCAAGAGGCCCTGCAACAATCTCTCTGACCTACTGGAAAGTACTTCT CTTTGTGAAGCAACATTGTCTAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCCTGCGAACTGCCTGTGAGACAGCTGGCTCCACCATGGGAAATGAGCCCAGTAACCCA ATGGAGATGTGCTCCCAGTTTGACCAAAACGAAATTAAACAGCTGAGCAAGCGGTTTAAG AAGGTGGACTTGGACAGTTCGGGCACTCTGACTATGAAGGAGCTCATGTCCCTGCCGGGG CTGCAGGTGAACCCGTTGGTGCAGCGAGTGTTCGACATTTTCGACACAGACGGCAACGGA GAAGTGGACTTCAAGGAATTCCTCGTGGGGACCTCCCAGTTCAGTGTCAAGGGCGACAAG GAGCAGAAGCTGAGGTTTGCTTTCAGCATCTATGACATGGACAAAGACGGCTACATTTCC AACGGGGAGCTCTTCCAGGTGCTAAACATGATGGTGGGAGACAACCTGAAAGACTGGCAG TTACAGCAGCTGGTGGACAAAACCATCATCGCCCTGGACAAGGATGGAGATGGGAAAATA TCCTTCCACGAATTCTGCGCTGTGGCCAGAAACCTGAAGGTCCACGAGAAATTGGGGGTA ATTGTGTGACCGTCTATAAGAGCACCACCCAACAACAACTTTTTCTTTCTTCTCTGTATC TTTAAACATCAGCTCAAGAGGCCCTGCAACAATCTCTCTGACCTACTGGAAAGTACTTCT CTTTGTGAAGCAACATTGTCTAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 356-483, + strand, RNAz p=0.794834 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 356-483, + strand, RNAz p=0.794834 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 14-676, gnl|bosTau2|chr8 (50260578-50259913) | |
| 14-676, gnl|Hg17|chr9 (101436791-101436122) | |
| 14-676, gnl|Mm7|chr4 (49695762-49695126) | |
| 80-254, gnl|bosTau2|chr11 (48135205-48135031) | |
| 80-254, gnl|canFam2|chr10 (70409568-70409774) | |
| 80-254, gnl|danRer3|chr14 (22491984-22491780) | |
| 80-254, gnl|dasNov1|scaffold_49611 (45072-45291) | |
| 80-254, gnl|echTel1|scaffold_288173 (40279-40076) | |
| 80-254, gnl|fr1|chrUn (99150522-99150732) | |
| 80-254, gnl|galGal2|chr3 (5938455-5938256) | |
| 80-254, gnl|hg17|chr2 (68327285-68327506) | |
| 80-254, gnl|Hg17|chr2 (68327473-68327299) | |
| 80-254, gnl|loxAfr1|scaffold_16893 (9625-9405) | |
| 80-254, gnl|mm7|chr11 (17145155-17144934) | |
| 80-254, gnl|Mm7|chr11 (17144966-17145140) | |
| 80-254, gnl|monDom2|scaffold_1 (34741174-34741388) | |
| 80-254, gnl|oryCun1|scaffold_206222 (88409-88613) | |
| 80-254, gnl|panTro1|chr12_random (25288810-25289031) | |
| 80-254, gnl|rheMac2|chr13 (68455905-68456126) | |
| 80-254, gnl|rn3|chr14 (98112478-98112258) | |
| 80-254, gnl|tetNig1|chrUn_random (105374842-105374657) | |
| 80-254, gnl|xenTro1|scaffold_112 (1191383-1191590) | |
| 317-503, gnl|bosTau2|chr11 (48132560-48132374) | |
| 317-503, gnl|canFam2|chr10 (70406753-70406897) | |
| 317-503, gnl|danRer3|chr14 (22494771-22494648) | |
| 317-503, gnl|echTel1|scaffold_288173 (42942-42800) | |
| 317-503, gnl|fr1|chrUn (99149779-99149926) | |
| 317-503, gnl|galGal2|chr3 (5940763-5940616) | |
| 317-503, gnl|hg17|chr2 (68325225-68325370) | |
| 317-503, gnl|Hg17|chr2 (68325435-68325249) | |
| 317-503, gnl|loxAfr1|scaffold_16893 (12275-12132) | |
| 317-503, gnl|mm7|chr11 (17146887-17146745) | |
| 317-503, gnl|Mm7|chr11 (17146678-17146864) | |
| 317-503, gnl|monDom2|scaffold_1 (34734487-34734631) | |
| 317-503, gnl|oryCun1|scaffold_206222 (86087-86231) | |
| 317-503, gnl|panTro1|chr12_random (25286748-25286892) | |
| 317-503, gnl|rheMac2|chr13 (68453835-68453979) | |
| 317-503, gnl|rn3|chr14 (98114829-98114688) | |
| 317-503, gnl|tetNig1|chrUn_random (105375399-105375273) | |
| 317-503, gnl|xenTro1|scaffold_112 (1186977-1187102) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-676, gnl|bosTau2|chr8 (50260578-50259913) | |
| 14-676, gnl|Hg17|chr9 (101436791-101436122) | |
| 14-676, gnl|Mm7|chr4 (49695762-49695126) | |
| 80-254, gnl|bosTau2|chr11 (48135205-48135031) | |
| 80-254, gnl|canFam2|chr10 (70409568-70409774) | |
| 80-254, gnl|danRer3|chr14 (22491984-22491780) | |
| 80-254, gnl|dasNov1|scaffold_49611 (45072-45291) | |
| 80-254, gnl|echTel1|scaffold_288173 (40279-40076) | |
| 80-254, gnl|fr1|chrUn (99150522-99150732) | |
| 80-254, gnl|galGal2|chr3 (5938455-5938256) | |
| 80-254, gnl|hg17|chr2 (68327285-68327506) | |
| 80-254, gnl|Hg17|chr2 (68327473-68327299) | |
| 80-254, gnl|loxAfr1|scaffold_16893 (9625-9405) | |
| 80-254, gnl|mm7|chr11 (17145155-17144934) | |
| 80-254, gnl|Mm7|chr11 (17144966-17145140) | |
| 80-254, gnl|monDom2|scaffold_1 (34741174-34741388) | |
| 80-254, gnl|oryCun1|scaffold_206222 (88409-88613) | |
| 80-254, gnl|panTro1|chr12_random (25288810-25289031) | |
| 80-254, gnl|rheMac2|chr13 (68455905-68456126) | |
| 80-254, gnl|rn3|chr14 (98112478-98112258) | |
| 80-254, gnl|tetNig1|chrUn_random (105374842-105374657) | |
| 80-254, gnl|xenTro1|scaffold_112 (1191383-1191590) | |
| 317-503, gnl|bosTau2|chr11 (48132560-48132374) | |
| 317-503, gnl|canFam2|chr10 (70406753-70406897) | |
| 317-503, gnl|danRer3|chr14 (22494771-22494648) | |
| 317-503, gnl|echTel1|scaffold_288173 (42942-42800) | |
| 317-503, gnl|fr1|chrUn (99149779-99149926) | |
| 317-503, gnl|galGal2|chr3 (5940763-5940616) | |
| 317-503, gnl|hg17|chr2 (68325225-68325370) | |
| 317-503, gnl|Hg17|chr2 (68325435-68325249) | |
| 317-503, gnl|loxAfr1|scaffold_16893 (12275-12132) | |
| 317-503, gnl|mm7|chr11 (17146887-17146745) | |
| 317-503, gnl|Mm7|chr11 (17146678-17146864) | |
| 317-503, gnl|monDom2|scaffold_1 (34734487-34734631) | |
| 317-503, gnl|oryCun1|scaffold_206222 (86087-86231) | |
| 317-503, gnl|panTro1|chr12_random (25286748-25286892) | |
| 317-503, gnl|rheMac2|chr13 (68453835-68453979) | |
| 317-503, gnl|rn3|chr14 (98114829-98114688) | |
| 317-503, gnl|tetNig1|chrUn_random (105375399-105375273) | |
| 317-503, gnl|xenTro1|scaffold_112 (1186977-1187102) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (2.04918) | |
| tes (1.4547) |