Non-Coding RNA Search

Ss1.1-rtes02_n3.5

Sequence:


               
               AAGAAGGAAAAAAAAAGGACTGAACTGGAGTAAACAAATTCTCCTTCACTGGCGTCAGTA
AATCTCTGTTACCCTCTTCCCCCCATATTAAAGAGAAATGACTTTTTCCCCCTAAGAGAT
ACCAAACATGTTTTATAAATTGTGTGTCTCATGATCCTTCAAAGACTAGGATTGTTCCTT
GAGGACAAGACTAAACTAGAAAAAAGTGACCATGTCAGAGGAGGGAGTTAACCCTTCTCA
TACCATGTTTAGTGTGCTCTCTCCACTGCACCCCACACAACTCTGCTCTTTCTCCTAAAC
ACTAATAAATCTTTCTTTCTGTCT------------------------------------
------------------------------------------------------------
------------------------CTTCTTGACCTACCCACAGCAGAAGCAGACAGAGGC
CTCTTCACCCACATGCTCATCTCATCTCTAACATGTTACCCTCTGTATATGTGCATACGT
GGCTTTCCTGCAATGCCCTGCTGGTCCCCTTTCCCCACCAGGCATACCGTCCTTTATTCG
ACTGGCTGATGGTCCACTAGTTCTTCAGCACTTGGTCCAAATGCTACGTTTTTCTGAAAA
GTCTTTCTTGATATTCCCCCACCCCTACCTAGAGCAAGAGACTCTGCTGTCACATCCCAG
TGTTTCCCTGTGTCACAGCCACTATGGCACAGTATTTAATGGATGTTTCCTGGCCAGAGT
GCCCCTAGCCTATAAGCAACACAAGGGTAAGAACTGCACGTGATCTTTTATAGACCTAGC
ATCCGGTTCAGTTCCTGGCAGGCAGGCATTCCCTCAGTATTTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGGAAAAAAAAAGGACTGAACTGGAGTAAACAAATTCTCCTTCACTGGCGTCAGTA
AATCTCTGTTACCCTCTTCCCCCCATATTAAAGAGAAATGACTTTTTCCCCCTAAGAGAT
ACCAAACATGTTTTATAAATTGTGTGTCTCATGATCCTTCAAAGACTAGGATTGTTCCTT
GAGGACAAGACTAAACTAGAAAAAAGTGACCATGTCAGAGGAGGGAGTTAACCCTTCTCA
TACCATGTTTAGTGTGCTCTCTCCACTGCACCCCACACAACTCTGCTCTTTCTCCTAAAC
ACTAATAAATCTTTCTTTCTGTCT------------------------------------
------------------------------------------------------------
------------------------CTTCTTGACCTACCCACAGCAGAAGCAGACAGAGGC
CTCTTCACCCACATGCTCATCTCATCTCTAACATGTTACCCTCTGTATATGTGCATACGT
GGCTTTCCTGCAATGCCCTGCTGGTCCCCTTTCCCCACCAGGCATACCGTCCTTTATTCG
ACTGGCTGATGGTCCACTAGTTCTTCAGCACTTGGTCCAAATGCTACGTTTTTCTGAAAA
GTCTTTCTTGATATTCCCCCACCCCTACCTAGAGCAAGAGACTCTGCTGTCACATCCCAG
TGTTTCCCTGTGTCACAGCCACTATGGCACAGTATTTAATGGATGTTTCCTGGCCAGAGT
GCCCCTAGCCTATAAGCAACACAAGGGTAAGAACTGCACGTGATCTTTTATAGACCTAGC
ATCCGGTTCAGTTCCTGGCAGGCAGGCATTCCCTCAGTATTTAAAAAC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               18-273, gnl|bosTau2|chr13 (41216935-41217199)
               

               
               18-273, gnl|Hg17|chr20 (1388226-1387577)
               


               
               410-767, gnl|bosTau2|chr13 (41217312-41217672)
               

               
               410-767, gnl|Mm7|chr2 (151240734-151241039)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-273, gnl|bosTau2|chr13 (41216935-41217199)
               

               
               18-273, gnl|Hg17|chr20 (1388226-1387577)
               


               
               410-767, gnl|bosTau2|chr13 (41217312-41217672)
               

               
               410-767, gnl|Mm7|chr2 (151240734-151241039)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	18-273, gnl\|bosTau2\|chr13 (41216935-41217199)
	18-273, gnl\|Hg17\|chr20 (1388226-1387577)

	410-767, gnl\|bosTau2\|chr13 (41217312-41217672)
	410-767, gnl\|Mm7\|chr2 (151240734-151241039)