Non-Coding RNA Search

Ss1.1-rtes02_o12.5

Sequence:


               
               ATTTTTATAGAGAAGAAAAGTAACAGAAGAACTCATGTTTATAAGCGTATAAATGGTTCA
AGATAATTTTAAAAATCATTTAATTTTTTATGCTTGCCTAGTTGTAGGGTCAAAAGTAAT
CTCATGACTGATGTAGTCAGCACCTCACAGCCTCTCCATATGGAAAGGGGATAATGAGAA
CATGTTATTTGGAAATAAGAAGTTGGTCTAAGAGCCGGGTGACCGCACCTAAAATGCACT
TGCACTATTACTCAGCAGCAGTAACATGGTAACACTTAAATGGTATTCGGGGACCTCCAA
AGACTAAACTGACACGCCTTCAAGGAGCCCAGGGGCTCACAGACGGGGAGTGATTTGTCT
CCTTTGGACCTCATCCAGAATCCATCAGCCTCACACACATATTTACCTGCAAATCATTGA
AAAAGCAAAGATGTTTAACTGCATGTGAGAGGTGGTTGTCATCTGCTTGAAAACCCCCTT
GAAAAATGTTGATTCTTGAGCATCCGTGGGAAATAGTGGTGTCTGAATAACCATTTTACA
TGATTTCCTAAGTAGGAGGTCTCTGCATTACCATGTTTGCTTGCAAAGTGGAAACCTTTT
AGATGTGTAACTTGAATATGTATCAAGATCTCAAGTGCTTAATGATAAGGTTTTGACTTG
TTAAATTAAACCATTTGGAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTATAGAGAAGAAAAGTAACAGAAGAACTCATGTTTATAAGCGTATAAATGGTTCA
AGATAATTTTAAAAATCATTTAATTTTTTATGCTTGCCTAGTTGTAGGGTCAAAAGTAAT
CTCATGACTGATGTAGTCAGCACCTCACAGCCTCTCCATATGGAAAGGGGATAATGAGAA
CATGTTATTTGGAAATAAGAAGTTGGTCTAAGAGCCGGGTGACCGCACCTAAAATGCACT
TGCACTATTACTCAGCAGCAGTAACATGGTAACACTTAAATGGTATTCGGGGACCTCCAA
AGACTAAACTGACACGCCTTCAAGGAGCCCAGGGGCTCACAGACGGGGAGTGATTTGTCT
CCTTTGGACCTCATCCAGAATCCATCAGCCTCACACACATATTTACCTGCAAATCATTGA
AAAAGCAAAGATGTTTAACTGCATGTGAGAGGTGGTTGTCATCTGCTTGAAAACCCCCTT
GAAAAATGTTGATTCTTGAGCATCCGTGGGAAATAGTGGTGTCTGAATAACCATTTTACA
TGATTTCCTAAGTAGGAGGTCTCTGCATTACCATGTTTGCTTGCAAAGTGGAAACCTTTT
AGATGTGTAACTTGAATATGTATCAAGATCTCAAGTGCTTAATGATAAGGTTTTGACTTG
TTAAATTAAACCATTTGGAATATA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-221, gnl|bosTau2|chr16 (22284281-22284064)
               

               
               1-221, gnl|Hg17|chr1 (11023879-11024393)
               

               
               1-221, gnl|Mm7|chr4 (147602563-147602359)
               


               
               334-684, gnl|bosTau2|chr16 (22283957-22283608)
               

               
               334-684, gnl|Hg17|chr1 (11024501-11024851)
               

               
               334-684, gnl|Mm7|chr4 (147602265-147601929)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr16 (22284281-22284064)
               

               
               1-221, gnl|Hg17|chr1 (11023879-11024393)
               

               
               1-221, gnl|Mm7|chr4 (147602563-147602359)
               


               
               334-684, gnl|bosTau2|chr16 (22283957-22283608)
               

               
               334-684, gnl|Hg17|chr1 (11024501-11024851)
               

               
               334-684, gnl|Mm7|chr4 (147602265-147601929)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

	1-221, gnl\|bosTau2\|chr16 (22284281-22284064)
	1-221, gnl\|Hg17\|chr1 (11023879-11024393)
	1-221, gnl\|Mm7\|chr4 (147602563-147602359)

	334-684, gnl\|bosTau2\|chr16 (22283957-22283608)
	334-684, gnl\|Hg17\|chr1 (11024501-11024851)
	334-684, gnl\|Mm7\|chr4 (147602265-147601929)

	cbe (0.239234)
	tes (0.207814)
	sag (0.182715)
	gul (0.177588)
	mcp (0.170648)
	csk (0.140746)
	lyg (0.133103)
	thg (0.126791)