Non-Coding RNA Search

Ss1.1-rtes02_o15.5

Sequence:


               
               GGAACGGGAAGAGAATAATCATAAGACATGAATTTTAATGTCTGGAATATCAAAGAGATG
CTCAGTATTCCCTCAGGTTCTGGGACTACTAGGTCATCTAACTGGAATAATAATCAGACT
GATTACTCCAGTCTCAGTGATTCCCAGTTCCTTTTTGGATCCCAGTTCTGTCCAGAAAGT
TCAGAGACCCTGTCAACACCCTTGGACTTTGGTGTCCATTTGAGACATCCAAAACAGTCA
CAACAGAATTCTCTGGATAGTGAACCTAGTATTTTCACAAAGTACCAAACAAAACCCCAG
CTGTTTGGAGGAGATACAAAAGATGGAGGCTTATTTCCTCTTCCTTTGTCAGTCGGAAAA
TCAAAAGGCCTCTTGGAACAGTTTGAGGAGAAAAAGAAAAGTGCAAAAGACAAATGCGAC
AGGTACACAAAACTTTCAGGTTGATGAGACAGCTCATCTTTTCTGAGGGAAACAGAAAAC
GGAATGTCAGTAGTCAAATAATTCAATTTCAGCATGGTAGCGTTCTTGCCTTTACAGCTC
ATCTAATTCTTACTCTTTGCTTTCTTGTCAATGTGACTTATGGTAGATTTGAACATGGCT
GCCACAGTTTTGGGCTCCTGAATATTAAGCTAAGAGACCTCTCAGAGAAATGCCGTATTA
AAAAAGGTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGGGAAGAGAATAATCATAAGACATGAATTTTAATGTCTGGAATATCAAAGAGATG
CTCAGTATTCCCTCAGGTTCTGGGACTACTAGGTCATCTAACTGGAATAATAATCAGACT
GATTACTCCAGTCTCAGTGATTCCCAGTTCCTTTTTGGATCCCAGTTCTGTCCAGAAAGT
TCAGAGACCCTGTCAACACCCTTGGACTTTGGTGTCCATTTGAGACATCCAAAACAGTCA
CAACAGAATTCTCTGGATAGTGAACCTAGTATTTTCACAAAGTACCAAACAAAACCCCAG
CTGTTTGGAGGAGATACAAAAGATGGAGGCTTATTTCCTCTTCCTTTGTCAGTCGGAAAA
TCAAAAGGCCTCTTGGAACAGTTTGAGGAGAAAAAGAAAAGTGCAAAAGACAAATGCGAC
AGGTACACAAAACTTTCAGGTTGATGAGACAGCTCATCTTTTCTGAGGGAAACAGAAAAC
GGAATGTCAGTAGTCAAATAATTCAATTTCAGCATGGTAGCGTTCTTGCCTTTACAGCTC
ATCTAATTCTTACTCTTTGCTTTCTTGTCAATGTGACTTATGGTAGATTTGAACATGGCT
GCCACAGTTTTGGGCTCCTGAATATTAAGCTAAGAGACCTCTCAGAGAAATGCCGTATTA
AAAAAGGTTATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-377, - strand, RNAz p=0.589294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-377, - strand, RNAz p=0.589294

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               78-249, gnl|bosTau2|chr22 (37722240-37722410)
               


               
               259-566, gnl|bosTau2|chr22 (37723562-37723871)
               

               
               259-566, gnl|Hg17|chr3 (49253663-49253927)
               

               
               259-566, gnl|Mm7|chr9 (108150902-108148617)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-249, gnl|bosTau2|chr22 (37722240-37722410)
               


               
               259-566, gnl|bosTau2|chr22 (37723562-37723871)
               

               
               259-566, gnl|Hg17|chr3 (49253663-49253927)
               

               
               259-566, gnl|Mm7|chr9 (108150902-108148617)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (1.4547)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)

	78-249, gnl\|bosTau2\|chr22 (37722240-37722410)

	259-566, gnl\|bosTau2\|chr22 (37723562-37723871)
	259-566, gnl\|Hg17\|chr3 (49253663-49253927)
	259-566, gnl\|Mm7\|chr9 (108150902-108148617)