Ss1.1-rtes03_a19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGTACCATATCCAATATCTCTGAGATGGAATTCTCCAGCTGAAGAAGGATCAAGTGACT GTGAAGTCTTTTCAAAAAATCATGCTGCTCCTTTCTCTAAAGTACTCACATTTTATAGAA AGGAACCTTTTACTCTTGAGGCCTATTATAGCTCTCCTCAGGATTTGCCCTATCCAGATC CTGCTATAGCTCAGTTTTCAGTTCAGAAAGTCACTCCTCAGTCTGATGGCTCCAGTTCAA AAGTGAAAGTCAAGGTTCGAGTAAATGTCCATGGCATTTTCAGTGTGTCCAGTGCATCTC TAGTGGAAGTGCACAAGTTTGAGGAAAATGAGGAACCGATGGAAACAGATCAGAATGCAA AGGAGGAAGAGAAGATGCAAGTGGACCAGGAGGAACCACATGTTGAAGAGCAACAGCAGC AGACACCAGCAGAAAATAAGGCAGAGACTGAAGAAATGGAGACCTCTCAAGCTGGATCAA AAGACAAAAAGATGGACCAACCACCTCAAGCCAAGAAGGCAAAAGTGAAGACTAGTACTG TGGACCTGCCAATTGAGAATCAGCTATTATGGCAGATAGACAGAGAGATGCTCAACTTGT ACATTGAAAATGAGGGTAAGATGATCATGCAGGATAAACTGGAGAAGGAGAGGAATGATG CTAAGAACGCGGTGGAAGAATATGTGTACGAAATGAGAGACAAGCTTAGTGGCGAGTATG AGAAGTTTGTGAGTGAAGATGATCGTAACACTTTCACCCTGAAACTAGAAGATACTGAAA ATTGGTTGTATGAGGATGGCGAAGACCAGCCAAAGCAAGTTTATGTTGATAAATTGGCTG AATTAAAAAATCTAGGTCAGCCTATTAAGATACGATTCCAGGAATCTGAAGAAAGACCAA AATTATTTGAAGAACTAGGGAAACAAATCCAACAGTATATGAAAGTAATCAGCTCTTTCA AGAACAAGGAGGACCAGTATGACCATTTGGATGCTGCTGACATGGTGAAGGTGGAAAAAA GCATGAATGAGGCCATGGAGTGGATGAATAACAAGCTGAATCTGCAGAACAAGCAGAGTC TGACCGTGGATCCAGTTGTCAAGGCAAAAGAGATTGAAGCTAAAATTAAAGAGCTGACGA ATATCTGTAACCCCATAATTTCAAAGCCCAAACCCAAAGTTGAACCTCCAAAAGAGGAGC AAAAAAATGCAGAGCAAAATGGACCAGTGGATGGACAAGGAGACAGCCCAGGCCCTCAGG CTTCTGAGCAGGGTACAGACACAGCTGTGCCTTCGGATTCAGACAAGAAGCTTCCTGAAA TGGACATTGATTGATTCCAACAATTGTTTATATTAAAACAGACTATTATAAAGCTTTAAG TTGTCAACTTTGTTCTAAATATCAACTAGAGCAATTAAATACTGGAGATTTCCTAGTCAG TTTTTAGGGGATTCTGGGGGACGGGATATAGGTAATGTATGGAGCATTTTGACTTCTAAA TAGTTAGATACAGAAATGAAGTGCATTGTATCTTTTTCATAATGGTACTATTTAGAAGCC CAGTTAGTTATACTGAGCTTATGCTTTATTCCTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGTACCATATCCAATATCTCTGAGATGGAATTCTCCAGCTGAAGAAGGATCAAGTGACT GTGAAGTCTTTTCAAAAAATCATGCTGCTCCTTTCTCTAAAGTACTCACATTTTATAGAA AGGAACCTTTTACTCTTGAGGCCTATTATAGCTCTCCTCAGGATTTGCCCTATCCAGATC CTGCTATAGCTCAGTTTTCAGTTCAGAAAGTCACTCCTCAGTCTGATGGCTCCAGTTCAA AAGTGAAAGTCAAGGTTCGAGTAAATGTCCATGGCATTTTCAGTGTGTCCAGTGCATCTC TAGTGGAAGTGCACAAGTTTGAGGAAAATGAGGAACCGATGGAAACAGATCAGAATGCAA AGGAGGAAGAGAAGATGCAAGTGGACCAGGAGGAACCACATGTTGAAGAGCAACAGCAGC AGACACCAGCAGAAAATAAGGCAGAGACTGAAGAAATGGAGACCTCTCAAGCTGGATCAA AAGACAAAAAGATGGACCAACCACCTCAAGCCAAGAAGGCAAAAGTGAAGACTAGTACTG TGGACCTGCCAATTGAGAATCAGCTATTATGGCAGATAGACAGAGAGATGCTCAACTTGT ACATTGAAAATGAGGGTAAGATGATCATGCAGGATAAACTGGAGAAGGAGAGGAATGATG CTAAGAACGCGGTGGAAGAATATGTGTACGAAATGAGAGACAAGCTTAGTGGCGAGTATG AGAAGTTTGTGAGTGAAGATGATCGTAACACTTTCACCCTGAAACTAGAAGATACTGAAA ATTGGTTGTATGAGGATGGCGAAGACCAGCCAAAGCAAGTTTATGTTGATAAATTGGCTG AATTAAAAAATCTAGGTCAGCCTATTAAGATACGATTCCAGGAATCTGAAGAAAGACCAA AATTATTTGAAGAACTAGGGAAACAAATCCAACAGTATATGAAAGTAATCAGCTCTTTCA AGAACAAGGAGGACCAGTATGACCATTTGGATGCTGCTGACATGGTGAAGGTGGAAAAAA GCATGAATGAGGCCATGGAGTGGATGAATAACAAGCTGAATCTGCAGAACAAGCAGAGTC TGACCGTGGATCCAGTTGTCAAGGCAAAAGAGATTGAAGCTAAAATTAAAGAGCTGACGA ATATCTGTAACCCCATAATTTCAAAGCCCAAACCCAAAGTTGAACCTCCAAAAGAGGAGC AAAAAAATGCAGAGCAAAATGGACCAGTGGATGGACAAGGAGACAGCCCAGGCCCTCAGG CTTCTGAGCAGGGTACAGACACAGCTGTGCCTTCGGATTCAGACAAGAAGCTTCCTGAAA TGGACATTGATTGATTCCAACAATTGTTTATATTAAAACAGACTATTATAAAGCTTTAAG TTGTCAACTTTGTTCTAAATATCAACTAGAGCAATTAAATACTGGAGATTTCCTAGTCAG TTTTTAGGGGATTCTGGGGGACGGGATATAGGTAATGTATGGAGCATTTTGACTTCTAAA TAGTTAGATACAGAAATGAAGTGCATTGTATCTTTTTCATAATGGTACTATTTAGAAGCC CAGTTAGTTATACTGAGCTTATGCTTTATTCCTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 498-1596, - strand, RNAz p=0.9949 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 498-1596, - strand, RNAz p=0.9949 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 187-371, gnl|bosTau2|chr7 (30340816-30340632) | |
| 187-371, gnl|canFam2|chr11 (24356561-24356755) | |
| 187-371, gnl|danRer3|chr21 (39733645-39733836) | |
| 187-371, gnl|dasNov1|scaffold_12428 (48762-48567) | |
| 187-371, gnl|echTel1|scaffold_234186 (9815-9625) | |
| 187-371, gnl|fr1|chrUn (207336372-207336561) | |
| 187-371, gnl|galGal2|chr13 (16183731-16183923) | |
| 187-371, gnl|hg17|chr5 (132454779-132454973) | |
| 187-371, gnl|Hg17|chr5 (132454781-132454965) | |
| 187-371, gnl|loxAfr1|scaffold_849 (40407-40213) | |
| 187-371, gnl|mm7|chr11 (53226632-53226439) | |
| 187-371, gnl|Mm7|chr11 (53226628-53226445) | |
| 187-371, gnl|monDom2|scaffold_6 (92120078-92119884) | |
| 187-371, gnl|oryCun1|scaffold_93594 (8161-8355) | |
| 187-371, gnl|panTro1|chr4 (138790558-138790752) | |
| 187-371, gnl|rheMac2|chr6 (129491387-129491581) | |
| 187-371, gnl|rn3|chr10 (38722407-38722213) | |
| 187-371, gnl|tetNig1|chr1 (1231003-1231195) | |
| 187-371, gnl|xenTro1|scaffold_473 (949222-949417) | |
| 460-615, gnl|bosTau2|chr7 (30336162-30336007) | |
| 460-615, gnl|canFam2|chr11 (24361569-24361759) | |
| 460-615, gnl|danRer3|chr21 (39740848-39741038) | |
| 460-615, gnl|dasNov1|scaffold_12428 (43848-43660) | |
| 460-615, gnl|echTel1|scaffold_20262 (1066-1224) | |
| 460-615, gnl|fr1|chrUn (207337255-207337397) | |
| 460-615, gnl|galGal2|chr13 (16184814-16184993) | |
| 460-615, gnl|hg17|chr5 (132459665-132459854) | |
| 460-615, gnl|Hg17|chr5 (132459687-132459842) | |
| 460-615, gnl|loxAfr1|scaffold_849 (37359-37176) | |
| 460-615, gnl|mm7|chr11 (53223901-53223722) | |
| 460-615, gnl|Mm7|chr11 (53223877-53223722) | |
| 460-615, gnl|monDom2|scaffold_6 (92111946-92111757) | |
| 460-615, gnl|oryCun1|scaffold_149675 (1238-1053) | |
| 460-615, gnl|panTro1|chr4 (138795427-138795616) | |
| 460-615, gnl|rheMac2|chr6 (129496249-129496438) | |
| 460-615, gnl|rn3|chr10 (38719218-38719039) | |
| 460-615, gnl|tetNig1|chr1 (1231525-1231687) | |
| 460-615, gnl|xenTro1|scaffold_473 (952641-952827) | |
| 846-969, gnl|bosTau2|chr7 (30332659-30332536) | |
| 846-969, gnl|Hg17|chr5 (132465347-132465470) | |
| 846-969, gnl|Mm7|chr11 (53219758-53219636) | |
| 1131-1596, gnl|bosTau2|chr7 (30329882-30329416) | |
| 1131-1596, gnl|Hg17|chr5 (132467824-132468288) | |
| 1131-1596, gnl|Mm7|chr11 (53218572-53218106) | |
| 1218-1375, gnl|bosTau2|chr22 (23354199-23354356) | |
| 1218-1375, gnl|Hg17|chr5 (132467911-132468068) | |
| 1218-1375, gnl|Mm7|chr11 (53218490-53218328) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-371, gnl|bosTau2|chr7 (30340816-30340632) | |
| 187-371, gnl|canFam2|chr11 (24356561-24356755) | |
| 187-371, gnl|danRer3|chr21 (39733645-39733836) | |
| 187-371, gnl|dasNov1|scaffold_12428 (48762-48567) | |
| 187-371, gnl|echTel1|scaffold_234186 (9815-9625) | |
| 187-371, gnl|fr1|chrUn (207336372-207336561) | |
| 187-371, gnl|galGal2|chr13 (16183731-16183923) | |
| 187-371, gnl|hg17|chr5 (132454779-132454973) | |
| 187-371, gnl|Hg17|chr5 (132454781-132454965) | |
| 187-371, gnl|loxAfr1|scaffold_849 (40407-40213) | |
| 187-371, gnl|mm7|chr11 (53226632-53226439) | |
| 187-371, gnl|Mm7|chr11 (53226628-53226445) | |
| 187-371, gnl|monDom2|scaffold_6 (92120078-92119884) | |
| 187-371, gnl|oryCun1|scaffold_93594 (8161-8355) | |
| 187-371, gnl|panTro1|chr4 (138790558-138790752) | |
| 187-371, gnl|rheMac2|chr6 (129491387-129491581) | |
| 187-371, gnl|rn3|chr10 (38722407-38722213) | |
| 187-371, gnl|tetNig1|chr1 (1231003-1231195) | |
| 187-371, gnl|xenTro1|scaffold_473 (949222-949417) | |
| 460-615, gnl|bosTau2|chr7 (30336162-30336007) | |
| 460-615, gnl|canFam2|chr11 (24361569-24361759) | |
| 460-615, gnl|danRer3|chr21 (39740848-39741038) | |
| 460-615, gnl|dasNov1|scaffold_12428 (43848-43660) | |
| 460-615, gnl|echTel1|scaffold_20262 (1066-1224) | |
| 460-615, gnl|fr1|chrUn (207337255-207337397) | |
| 460-615, gnl|galGal2|chr13 (16184814-16184993) | |
| 460-615, gnl|hg17|chr5 (132459665-132459854) | |
| 460-615, gnl|Hg17|chr5 (132459687-132459842) | |
| 460-615, gnl|loxAfr1|scaffold_849 (37359-37176) | |
| 460-615, gnl|mm7|chr11 (53223901-53223722) | |
| 460-615, gnl|Mm7|chr11 (53223877-53223722) | |
| 460-615, gnl|monDom2|scaffold_6 (92111946-92111757) | |
| 460-615, gnl|oryCun1|scaffold_149675 (1238-1053) | |
| 460-615, gnl|panTro1|chr4 (138795427-138795616) | |
| 460-615, gnl|rheMac2|chr6 (129496249-129496438) | |
| 460-615, gnl|rn3|chr10 (38719218-38719039) | |
| 460-615, gnl|tetNig1|chr1 (1231525-1231687) | |
| 460-615, gnl|xenTro1|scaffold_473 (952641-952827) | |
| 846-969, gnl|bosTau2|chr7 (30332659-30332536) | |
| 846-969, gnl|Hg17|chr5 (132465347-132465470) | |
| 846-969, gnl|Mm7|chr11 (53219758-53219636) | |
| 1131-1596, gnl|bosTau2|chr7 (30329882-30329416) | |
| 1131-1596, gnl|Hg17|chr5 (132467824-132468288) | |
| 1131-1596, gnl|Mm7|chr11 (53218572-53218106) | |
| 1218-1375, gnl|bosTau2|chr22 (23354199-23354356) | |
| 1218-1375, gnl|Hg17|chr5 (132467911-132468068) | |
| 1218-1375, gnl|Mm7|chr11 (53218490-53218328) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cte (1.75644) | |
| sin (0.69979) | |
| amn (0.417711) | |
| tes (0.415628) | |
| ret (0.3862) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| ski (0.29347) | |
| csk (0.281492) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| sug (0.127291) | |
| tra (0.123092) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.75644) | |
| sin (0.69979) | |
| amn (0.417711) | |
| tes (0.415628) | |
| ret (0.3862) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| ski (0.29347) | |
| csk (0.281492) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| sug (0.127291) | |
| tra (0.123092) | |
| jca (0.11396) | |
| ldo (0.0970026) |