Non-Coding RNA Search

Ss1.1-rtes03_e15.5

Sequence:


               
               GAACTCCGCATTACAATGGCAGCTTTATGAGTAGAAAGTCTTCTGAATATCGAACCCATC
TGTGAGAGAAATCCAGTCACTTTATTTATTTTCAGTCTCTCTAGGATGAGTTTAGAACTG
TAGCAGTGCAGGTGGCTTAAGTGAAATAACCCCACATGTAATTATATGATTATGACACTA
ATCTTATAAGTCACACAAAGAATACTGTAATGAATCAGTCTTGGATCCACAGTGGGAACA
AGTTTCTGATTTTGAAAGGAAAATGCTGTCTCAGACATTTTAGTGTTTGGTGAAATCAAA
ACACAAACCACTTCAGAAGCACACTTCTTGATGGAGAGCACTCATTGCACGGTGGGAAGA
GCATCCGTTTTCAAACCACACTGATACTGAAATTCTGTGGCGTTGCACACATTAGGCCTC
GGTGTCAGGATCAAAATCGCTTATGTTCCTTTCTTCATCATGGTGTTTTCTTTTTAATAG
TGATTTACTTTGATCACCATTCAAAACCCACACTCTTCATAGATAATAGGGCAAAGTCTT
GAGAATATAATGGTGTAGTAGTAGTTGGAAATTAATTGCCGTCATTATTTACGTACTTAA
GATATATTCGATAGCTGTTCCAAAATGATGCCTTGGGAGAAGGATGGAGGAGAAAGTGGT
AGCCGTCCAGGATTTCAAAGAATTCCATATCCTTCAGATTAGTTTCCATTTGCACAATTA
CTAGAAATGTCATGAAACATAGTTTAAAAACTCATTACCTACCCTACTTTACATTTTTGT
GTGTGTTTGAATCCAGAGAAGTTAATTGGTGAGTTTTGAGACAGTATTTAAAAGTTTAGT
GGGATTGAATTTTTTGCTGAAGTCCTTATAAAGTAGCATATGGTGAGAAGTACTGTGCTC
AAATTTCACATAAAATATTTTACTACTATTTCCTCTGCAAATTCTGTAATTCTGCTGAAT
GATTAAGTCTACCAAAGAACTTACTGCATGTAGAAATGTATTACAGTGCCAGTAAAGGAA
TCCTGCTTCACTTTTTGCCTGCTACAGTAAGAGTTCAGCGCTGGTATAAACACTTGACTC
CCTGACGTCTGTTTTACTCTGTTTAAGAGCCATATGTTATTGTACTGTAACACAAAGGAG
CTTCTTGTCCCCTGGGTCTTTAATTAAAAGAAAACTTCAGCTGACTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCCGCATTACAATGGCAGCTTTATGAGTAGAAAGTCTTCTGAATATCGAACCCATC
TGTGAGAGAAATCCAGTCACTTTATTTATTTTCAGTCTCTCTAGGATGAGTTTAGAACTG
TAGCAGTGCAGGTGGCTTAAGTGAAATAACCCCACATGTAATTATATGATTATGACACTA
ATCTTATAAGTCACACAAAGAATACTGTAATGAATCAGTCTTGGATCCACAGTGGGAACA
AGTTTCTGATTTTGAAAGGAAAATGCTGTCTCAGACATTTTAGTGTTTGGTGAAATCAAA
ACACAAACCACTTCAGAAGCACACTTCTTGATGGAGAGCACTCATTGCACGGTGGGAAGA
GCATCCGTTTTCAAACCACACTGATACTGAAATTCTGTGGCGTTGCACACATTAGGCCTC
GGTGTCAGGATCAAAATCGCTTATGTTCCTTTCTTCATCATGGTGTTTTCTTTTTAATAG
TGATTTACTTTGATCACCATTCAAAACCCACACTCTTCATAGATAATAGGGCAAAGTCTT
GAGAATATAATGGTGTAGTAGTAGTTGGAAATTAATTGCCGTCATTATTTACGTACTTAA
GATATATTCGATAGCTGTTCCAAAATGATGCCTTGGGAGAAGGATGGAGGAGAAAGTGGT
AGCCGTCCAGGATTTCAAAGAATTCCATATCCTTCAGATTAGTTTCCATTTGCACAATTA
CTAGAAATGTCATGAAACATAGTTTAAAAACTCATTACCTACCCTACTTTACATTTTTGT
GTGTGTTTGAATCCAGAGAAGTTAATTGGTGAGTTTTGAGACAGTATTTAAAAGTTTAGT
GGGATTGAATTTTTTGCTGAAGTCCTTATAAAGTAGCATATGGTGAGAAGTACTGTGCTC
AAATTTCACATAAAATATTTTACTACTATTTCCTCTGCAAATTCTGTAATTCTGCTGAAT
GATTAAGTCTACCAAAGAACTTACTGCATGTAGAAATGTATTACAGTGCCAGTAAAGGAA
TCCTGCTTCACTTTTTGCCTGCTACAGTAAGAGTTCAGCGCTGGTATAAACACTTGACTC
CCTGACGTCTGTTTTACTCTGTTTAAGAGCCATATGTTATTGTACTGTAACACAAAGGAG
CTTCTTGTCCCCTGGGTCTTTAATTAAAAGAAAACTTCAGCTGACTTTAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1192, gnl|bosTau2|chr15 (3611986-3613194)
               

               
               1-1192, gnl|Hg17|chr11 (95208070-95206904)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1192, gnl|bosTau2|chr15 (3611986-3613194)
               

               
               1-1192, gnl|Hg17|chr11 (95208070-95206904)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-1192, gnl\|bosTau2\|chr15 (3611986-3613194)
	1-1192, gnl\|Hg17\|chr11 (95208070-95206904)

	mas (0.210305)
	tes (0.207814)
	fty (0.17584)
	fbs (0.175346)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)