Non-Coding RNA Search

Ss1.1-rtes03_e19.5

Sequence:


               
               CTGGAAGAATTTTTCTCTGATGTTTAGTGTTCTGGCATGCACTAAAGATGAAAGATGCAG
TGTTCTAGTTCTTTTAGTAAAGATACTAAGATGAAGAAAGACCTCAGTAACTATTGATTG
AAATGTCTCATTCTGGGAATCAGAGTACTTCATTTTGCTTTCAACAAATTCTCAAAATTT
ACAAGCGTTCTGGAACCTTTCTGCCGCAGGAAGAAGCTATTCCCCCTTTAATGAAGGATG
AAGACTGAATAGAATATAGCTACAAGATGAAGAAGTAGTCCGATTTATTTCCAGGTATTC
TTAAATATCGCAATCTGAATGGTTTTTTTCCCAAATCAGTGGATAGCGGGTTCCCAGTGC
CGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAGAGAA
GGAAAATGTTTAGATCCACTTTGCAGATTTAGACACATGGAAATGCAGCAAAACTGCAGT
ATTTCATGCTTCTGGGAAACTCAGCCTCTTGGTTGTGTGAAGATCAGTTGTATCTTTTAT
CACAGCAAACCTCGAAATATCAATGGATTATTTTTGCCACCAAGTAGCAATATCACTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAAGAATTTTTCTCTGATGTTTAGTGTTCTGGCATGCACTAAAGATGAAAGATGCAG
TGTTCTAGTTCTTTTAGTAAAGATACTAAGATGAAGAAAGACCTCAGTAACTATTGATTG
AAATGTCTCATTCTGGGAATCAGAGTACTTCATTTTGCTTTCAACAAATTCTCAAAATTT
ACAAGCGTTCTGGAACCTTTCTGCCGCAGGAAGAAGCTATTCCCCCTTTAATGAAGGATG
AAGACTGAATAGAATATAGCTACAAGATGAAGAAGTAGTCCGATTTATTTCCAGGTATTC
TTAAATATCGCAATCTGAATGGTTTTTTTCCCAAATCAGTGGATAGCGGGTTCCCAGTGC
CGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAGAGAA
GGAAAATGTTTAGATCCACTTTGCAGATTTAGACACATGGAAATGCAGCAAAACTGCAGT
ATTTCATGCTTCTGGGAAACTCAGCCTCTTGGTTGTGTGAAGATCAGTTGTATCTTTTAT
CACAGCAAACCTCGAAATATCAATGGATTATTTTTGCCACCAAGTAGCAATATCACTCTA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               62-349, gnl|bosTau2|chr10 (47265324-47265040)
               

               
               62-349, gnl|canFam2|chr15 (32192182-32192705)
               

               
               62-349, gnl|dasNov1|scaffold_22110 (43629-44158)
               

               
               62-349, gnl|echTel1|scaffold_309593 (100114-99589)
               

               
               62-349, gnl|hg17|chr12 (86925828-86926357)
               

               
               62-349, gnl|Hg17|chr12 (86926314-86926030)
               

               
               62-349, gnl|loxAfr1|scaffold_13204 (48521-49027)
               

               
               62-349, gnl|mm7|chr10 (100078858-100078325)
               

               
               62-349, gnl|Mm7|chr10 (100078353-100078631)
               

               
               62-349, gnl|monDom2|scaffold_36 (24327132-24327692)
               

               
               62-349, gnl|panTro1|chr10 (89059350-89059879)
               

               
               62-349, gnl|rheMac2|chr11 (89152155-89152678)
               

               
               62-349, gnl|rn3|chr7 (38260959-38260475)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-349, gnl|bosTau2|chr10 (47265324-47265040)
               

               
               62-349, gnl|canFam2|chr15 (32192182-32192705)
               

               
               62-349, gnl|dasNov1|scaffold_22110 (43629-44158)
               

               
               62-349, gnl|echTel1|scaffold_309593 (100114-99589)
               

               
               62-349, gnl|hg17|chr12 (86925828-86926357)
               

               
               62-349, gnl|Hg17|chr12 (86926314-86926030)
               

               
               62-349, gnl|loxAfr1|scaffold_13204 (48521-49027)
               

               
               62-349, gnl|mm7|chr10 (100078858-100078325)
               

               
               62-349, gnl|Mm7|chr10 (100078353-100078631)
               

               
               62-349, gnl|monDom2|scaffold_36 (24327132-24327692)
               

               
               62-349, gnl|panTro1|chr10 (89059350-89059879)
               

               
               62-349, gnl|rheMac2|chr11 (89152155-89152678)
               

               
               62-349, gnl|rn3|chr7 (38260959-38260475)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.415628)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	62-349, gnl\|bosTau2\|chr10 (47265324-47265040)
	62-349, gnl\|canFam2\|chr15 (32192182-32192705)
	62-349, gnl\|dasNov1\|scaffold_22110 (43629-44158)
	62-349, gnl\|echTel1\|scaffold_309593 (100114-99589)
	62-349, gnl\|hg17\|chr12 (86925828-86926357)
	62-349, gnl\|Hg17\|chr12 (86926314-86926030)
	62-349, gnl\|loxAfr1\|scaffold_13204 (48521-49027)
	62-349, gnl\|mm7\|chr10 (100078858-100078325)
	62-349, gnl\|Mm7\|chr10 (100078353-100078631)
	62-349, gnl\|monDom2\|scaffold_36 (24327132-24327692)
	62-349, gnl\|panTro1\|chr10 (89059350-89059879)
	62-349, gnl\|rheMac2\|chr11 (89152155-89152678)
	62-349, gnl\|rn3\|chr7 (38260959-38260475)