Non-Coding RNA Search

Ss1.1-rtes03_e2.5

Sequence:


               
               AAGACATGGCCGAGTTCATACTGGAGAAAGGCCCTACGAGTGCAGTGAATGTGGGAAATT
TTTCAGGTACAGTTCCACATTCATTAGACATCAGAGAGTTCACACTGCAGAAAGGCCATA
TAAGTGTAACGAATGTGGGAATTCATTTAGGTACAACTCCACACTCATTAAGCACCAGAG
AGTTCACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAATTCTTTCGGTACAC
CTCTACCCTCATTAGACATCAAAGAATTCATACTGTAGAGAGGCCCTATGAGTGCAGCTT
GTGTGGGGAATTCTTCAGGTGCAAGTCCAAGCTTATTAAACATTGGCAGATTCACACTGG
AGAAAGGCCTTATGAGTGCAGTGAATGTGGCAAAGCCTTTAGGTACCACTGCAGACTCAT
TAGACATAAGAGAGTTCACAGTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAGTT
CTTTCGGTACAGCTCCAACCTCATTAAGCACTGGAGAAATCACACTGGAGAGAGGCCGTA
TGAGTGCAGCGAATGTGGGAAAGCCTTTAGCCACAGGCACATACTTGTGGAGCATCAGAA
AATCCATACTGGAGAAAGGCCTTATGAGTGCAGCAAATGTCAGAAAGCCTTCATTAGAAA
GTCTCACCTCGTTCATCACCAGAAGATCCACAGTGAAGAAGATGCGAGTGCTGTGATTAT
GGGGAACTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACATGGCCGAGTTCATACTGGAGAAAGGCCCTACGAGTGCAGTGAATGTGGGAAATT
TTTCAGGTACAGTTCCACATTCATTAGACATCAGAGAGTTCACACTGCAGAAAGGCCATA
TAAGTGTAACGAATGTGGGAATTCATTTAGGTACAACTCCACACTCATTAAGCACCAGAG
AGTTCACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAATTCTTTCGGTACAC
CTCTACCCTCATTAGACATCAAAGAATTCATACTGTAGAGAGGCCCTATGAGTGCAGCTT
GTGTGGGGAATTCTTCAGGTGCAAGTCCAAGCTTATTAAACATTGGCAGATTCACACTGG
AGAAAGGCCTTATGAGTGCAGTGAATGTGGCAAAGCCTTTAGGTACCACTGCAGACTCAT
TAGACATAAGAGAGTTCACAGTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAGTT
CTTTCGGTACAGCTCCAACCTCATTAAGCACTGGAGAAATCACACTGGAGAGAGGCCGTA
TGAGTGCAGCGAATGTGGGAAAGCCTTTAGCCACAGGCACATACTTGTGGAGCATCAGAA
AATCCATACTGGAGAAAGGCCTTATGAGTGCAGCAAATGTCAGAAAGCCTTCATTAGAAA
GTCTCACCTCGTTCATCACCAGAAGATCCACAGTGAAGAAGATGCGAGTGCTGTGATTAT
GGGGAACTCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BRY1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BRY1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-479, + strand, RNAz p=0.991339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, + strand, RNAz p=0.991339

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-732, gnl|bosTau2|chr18 (53560072-53560803)
               

               
               1-732, gnl|Mm7|chr7 (6741053-6741788)
               


               
               2-731, gnl|bosTau2|chr17 (22552538-22551805)
               

               
               2-731, gnl|Mm7|chr5 (109294834-109295567)
               


               
               11-700, gnl|bosTau2|chr10 (8996777-8996088)
               

               
               11-700, gnl|Hg17|chr19 (42818582-42817809)
               

               
               11-700, gnl|Mm7|chr2 (127310208-127309603)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr18 (53560072-53560803)
               

               
               1-732, gnl|Mm7|chr7 (6741053-6741788)
               


               
               2-731, gnl|bosTau2|chr17 (22552538-22551805)
               

               
               2-731, gnl|Mm7|chr5 (109294834-109295567)
               


               
               11-700, gnl|bosTau2|chr10 (8996777-8996088)
               

               
               11-700, gnl|Hg17|chr19 (42818582-42817809)
               

               
               11-700, gnl|Mm7|chr2 (127310208-127309603)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               eli (0.151814)

	1-732, gnl\|bosTau2\|chr18 (53560072-53560803)
	1-732, gnl\|Mm7\|chr7 (6741053-6741788)

	2-731, gnl\|bosTau2\|chr17 (22552538-22551805)
	2-731, gnl\|Mm7\|chr5 (109294834-109295567)

	11-700, gnl\|bosTau2\|chr10 (8996777-8996088)
	11-700, gnl\|Hg17\|chr19 (42818582-42817809)
	11-700, gnl\|Mm7\|chr2 (127310208-127309603)