Ss1.1-rtes03_e23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATAGAGAGGACAGTACAAGATGTACTCTTCCTTTCTCAGCTGCTATATTTCCTGTCATT TGGGAATTTCAAGCTTCTTTTGAAGAAACAGGAAAGAAGAGGTAGGAAACTATGTGAAAG AATCTTCTGATGTCACAATTTCTGGGTGTCACTGGAACATTTGATCATCTTTCCTTTGGC AATTCCAGCCTTCTCTGAAAGGTCAGTAGAAGCAATTGATTTATTGACCTCTACAGGAAT CATACTCGGCCTATTTTGGTTTTCGGTGAATTATGCCTTTTCGGCTTGGGACCCAGCCAA GGAGATTTCCAGTAGAAGGGGGAGATTCTTCTATTGGACTGGAAGTTGGGCTGAGCTCCA GTGCTGCCTGTAACGGGAAAGAGATGTTGCCAACCAGGCAACTCCGAAGATGCCCTGGAA GTCATTGCCTGACAATAACTGATGTTCCCATCACTGTCTATGCAACAATGCGAAAGCCAC CTGCACAAAGCAGCAAGGAAATGCATCCCAAATAGCATCATTAAGTCTTTAGTAGAGGTT TGACTAGGTCAAGGGTAATGGGCCGGTATCATCTTATGATCTGGTAAACAAATAAAAGTG GTGGCACCTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATAGAGAGGACAGTACAAGATGTACTCTTCCTTTCTCAGCTGCTATATTTCCTGTCATT TGGGAATTTCAAGCTTCTTTTGAAGAAACAGGAAAGAAGAGGTAGGAAACTATGTGAAAG AATCTTCTGATGTCACAATTTCTGGGTGTCACTGGAACATTTGATCATCTTTCCTTTGGC AATTCCAGCCTTCTCTGAAAGGTCAGTAGAAGCAATTGATTTATTGACCTCTACAGGAAT CATACTCGGCCTATTTTGGTTTTCGGTGAATTATGCCTTTTCGGCTTGGGACCCAGCCAA GGAGATTTCCAGTAGAAGGGGGAGATTCTTCTATTGGACTGGAAGTTGGGCTGAGCTCCA GTGCTGCCTGTAACGGGAAAGAGATGTTGCCAACCAGGCAACTCCGAAGATGCCCTGGAA GTCATTGCCTGACAATAACTGATGTTCCCATCACTGTCTATGCAACAATGCGAAAGCCAC CTGCACAAAGCAGCAAGGAAATGCATCCCAAATAGCATCATTAAGTCTTTAGTAGAGGTT TGACTAGGTCAAGGGTAATGGGCCGGTATCATCTTATGATCTGGTAAACAAATAAAAGTG GTGGCACCTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 100-217, + strand, RNAz p=0.647447 | |
| 396-514, - strand, RNAz p=0.97243 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 100-217, + strand, RNAz p=0.647447 | |
| 396-514, - strand, RNAz p=0.97243 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 100-260, gnl|bosTau2|chr9 (19407627-19407467) | |
| 100-260, gnl|canFam2|chr12 (71560969-71561216) | |
| 100-260, gnl|dasNov1|scaffold_39694 (3621-3860) | |
| 100-260, gnl|echTel1|scaffold_248802 (4116-3831) | |
| 100-260, gnl|hg17|chr6 (112524827-112525066) | |
| 100-260, gnl|Hg17|chr6 (112524938-112525099) | |
| 100-260, gnl|loxAfr1|scaffold_73444 (688-959) | |
| 100-260, gnl|mm7|chr10 (38902229-38902009) | |
| 100-260, gnl|Mm7|chr10 (38902133-38901974) | |
| 100-260, gnl|monDom2|scaffold_0 (107368156-107367908) | |
| 100-260, gnl|panTro1|chr5 (114872055-114872294) | |
| 100-260, gnl|rheMac2|chr4 (151845881-151845643) | |
| 100-260, gnl|rn3|chr20 (43292970-43292750) | |
| 396-612, gnl|bosTau2|chr9 (19403556-19403340) | |
| 396-612, gnl|canFam2|chr12 (71564380-71564795) | |
| 396-612, gnl|dasNov1|scaffold_39694 (6627-7035) | |
| 396-612, gnl|echTel1|scaffold_248802 (413-4) | |
| 396-612, gnl|hg17|chr6 (112528317-112528741) | |
| 396-612, gnl|Hg17|chr6 (112528564-112528780) | |
| 396-612, gnl|loxAfr1|scaffold_73444 (4473-4874) | |
| 396-612, gnl|mm7|chr10 (38899069-38898660) | |
| 396-612, gnl|Mm7|chr10 (38898835-38898614) | |
| 396-612, gnl|monDom2|scaffold_0 (107366612-107366182) | |
| 396-612, gnl|oryCun1|scaffold_201691 (36008-35609) | |
| 396-612, gnl|panTro1|chr5 (114875417-114875840) | |
| 396-612, gnl|rheMac2|chr4 (151842681-151842261) | |
| 396-612, gnl|rn3|chr20 (43290214-43289836) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-260, gnl|bosTau2|chr9 (19407627-19407467) | |
| 100-260, gnl|canFam2|chr12 (71560969-71561216) | |
| 100-260, gnl|dasNov1|scaffold_39694 (3621-3860) | |
| 100-260, gnl|echTel1|scaffold_248802 (4116-3831) | |
| 100-260, gnl|hg17|chr6 (112524827-112525066) | |
| 100-260, gnl|Hg17|chr6 (112524938-112525099) | |
| 100-260, gnl|loxAfr1|scaffold_73444 (688-959) | |
| 100-260, gnl|mm7|chr10 (38902229-38902009) | |
| 100-260, gnl|Mm7|chr10 (38902133-38901974) | |
| 100-260, gnl|monDom2|scaffold_0 (107368156-107367908) | |
| 100-260, gnl|panTro1|chr5 (114872055-114872294) | |
| 100-260, gnl|rheMac2|chr4 (151845881-151845643) | |
| 100-260, gnl|rn3|chr20 (43292970-43292750) | |
| 396-612, gnl|bosTau2|chr9 (19403556-19403340) | |
| 396-612, gnl|canFam2|chr12 (71564380-71564795) | |
| 396-612, gnl|dasNov1|scaffold_39694 (6627-7035) | |
| 396-612, gnl|echTel1|scaffold_248802 (413-4) | |
| 396-612, gnl|hg17|chr6 (112528317-112528741) | |
| 396-612, gnl|Hg17|chr6 (112528564-112528780) | |
| 396-612, gnl|loxAfr1|scaffold_73444 (4473-4874) | |
| 396-612, gnl|mm7|chr10 (38899069-38898660) | |
| 396-612, gnl|Mm7|chr10 (38898835-38898614) | |
| 396-612, gnl|monDom2|scaffold_0 (107366612-107366182) | |
| 396-612, gnl|oryCun1|scaffold_201691 (36008-35609) | |
| 396-612, gnl|panTro1|chr5 (114875417-114875840) | |
| 396-612, gnl|rheMac2|chr4 (151842681-151842261) | |
| 396-612, gnl|rn3|chr20 (43290214-43289836) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (1.03907) | |
| cte (0.87822) | |
| nlu (0.191681) | |
| che (0.136314) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.03907) | |
| cte (0.87822) | |
| nlu (0.191681) | |
| che (0.136314) |