Non-Coding RNA Search

Ss1.1-rtes03_f21.5

Sequence:


               
               AAGGGGAAGGGTAGAGAAGTATGGCAGCCCGGTCTCTCCCAGACAGACCCAGCCCTTCCG
GACACTGTGTCCAAACCAACAGAGCAGGGCTTGGCTCACCCTTCCCGTAAAAGGCGAGAA
AGTCGCTGTTTTCAGCTTTGCGGCCCATGCAGGTGTTGGATGCAAGGATCCAGCTCTGCC
ATTGGAGCCTGAGTGCAGCCATGGAGCGTGTACAGATGCGTGCACCTAGCTGTGTCCCAA
TAAAACTTTATTTGCAAACACAGCCAGATCGGGCCACCGTTGGCCAGTCCCGGGGCTCGA
TCAGTGCTGGAGCCCGCTTCTCCGGGGTGAGCCCACCTCCCCCAGAATCCTGCCAGGACC
AGCGAGCATCAACGGTATGGTTCACCCCACATCTCTTCTCTCGACAGGAGCAAAGTCCTG
GTGGCCTTCGAAGCTGTTCGTTTCGCTCTCCCGTCAGGAAAAACCAAAATACTGCCCCCA
GCAAAGACTATGCATTCAGTACCTTAACCCAGCTCGAGATGGACCTGGTGAAGTTCGTGT
CCAAGGTGCGGAATCTGAAGGTCGCCATGGCAACCGGCGGTCACCTCAAGCTTCAGCACT
TAGAGGCGCCTGCAGACCCGCACAACAATATCACCATCTACGAGATATGGGGCGAAGAAG
ACTCCGAGTGAGTGGATTCGTGTGTCCGTAGGAGAGAGTTGAGTGTTGCCAAACCGTATG
CAAACCAATAAAACTATTCTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGAAGGGTAGAGAAGTATGGCAGCCCGGTCTCTCCCAGACAGACCCAGCCCTTCCG
GACACTGTGTCCAAACCAACAGAGCAGGGCTTGGCTCACCCTTCCCGTAAAAGGCGAGAA
AGTCGCTGTTTTCAGCTTTGCGGCCCATGCAGGTGTTGGATGCAAGGATCCAGCTCTGCC
ATTGGAGCCTGAGTGCAGCCATGGAGCGTGTACAGATGCGTGCACCTAGCTGTGTCCCAA
TAAAACTTTATTTGCAAACACAGCCAGATCGGGCCACCGTTGGCCAGTCCCGGGGCTCGA
TCAGTGCTGGAGCCCGCTTCTCCGGGGTGAGCCCACCTCCCCCAGAATCCTGCCAGGACC
AGCGAGCATCAACGGTATGGTTCACCCCACATCTCTTCTCTCGACAGGAGCAAAGTCCTG
GTGGCCTTCGAAGCTGTTCGTTTCGCTCTCCCGTCAGGAAAAACCAAAATACTGCCCCCA
GCAAAGACTATGCATTCAGTACCTTAACCCAGCTCGAGATGGACCTGGTGAAGTTCGTGT
CCAAGGTGCGGAATCTGAAGGTCGCCATGGCAACCGGCGGTCACCTCAAGCTTCAGCACT
TAGAGGCGCCTGCAGACCCGCACAACAATATCACCATCTACGAGATATGGGGCGAAGAAG
ACTCCGAGTGAGTGGATTCGTGTGTCCGTAGGAGAGAGTTGAGTGTTGCCAAACCGTATG
CAAACCAATAAAACTATTCTGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34860847|ref|XP_215953.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34860847|ref|XP_215953.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-744, gnl|bosTau2|chr13 (40842138-40841388)
               

               
               1-744, gnl|Hg17|chr20 (54534020-54544976)
               

               
               1-744, gnl|Mm7|chr2 (172266132-172266948)
               


               
               422-618, gnl|bosTau2|chr12 (15923742-15923547)
               

               
               422-618, gnl|Hg17|chr20 (54534281-54534500)
               

               
               422-618, gnl|Mm7|chr2 (172266624-172266820)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr13 (40842138-40841388)
               

               
               1-744, gnl|Hg17|chr20 (54534020-54544976)
               

               
               1-744, gnl|Mm7|chr2 (172266132-172266948)
               


               
               422-618, gnl|bosTau2|chr12 (15923742-15923547)
               

               
               422-618, gnl|Hg17|chr20 (54534281-54534500)
               

               
               422-618, gnl|Mm7|chr2 (172266624-172266820)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               med (0.116252)

	1-744, gnl\|bosTau2\|chr13 (40842138-40841388)
	1-744, gnl\|Hg17\|chr20 (54534020-54544976)
	1-744, gnl\|Mm7\|chr2 (172266132-172266948)

	422-618, gnl\|bosTau2\|chr12 (15923742-15923547)
	422-618, gnl\|Hg17\|chr20 (54534281-54534500)
	422-618, gnl\|Mm7\|chr2 (172266624-172266820)