Ss1.1-rtes03_i1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCATTGCAGCTGCTCTGGAACTCATAGGAAGATCCCAGTTTTTGCAAACGCATGGAAGA ACCACGTGGCATGATGGAAGTGGTTCATTGCATGATGTTCAGCTCTCATTGCCATCCAGT CCAGAACCAGAAGACAGTGATCAAATATACAAGAATGAAGATTTGTTAAATGAAATAAAT CAACTTAAAGAGGAAATAAAGAAAAAAGATGAAAAAATCCAACTATTAGAACATCAGCTT GCAACTCGGTGTAACTGCAACCAAAAATCTAAAGAAGAAAAATGTACATATGCTGATAAA TATACCCAAACACCCTGGAGAAGAATTCCTCCTCCAGTACTACAGCCTTCCAGCAGCCTT CCCAGACCCACAGACCACGCCCAGGGAAAACTAATAAAGCCGCAACATATCGAGGCCCAC AGTGAGTGCACAGTCCAGAGCAAACATCAGGGTGTTGCACATCTGGACGAAGGCTTTACA CATGGCTTGCAACAGGAAAGCAACCATGGTCTGGAAGATCAGCCTTTTTCTCCGAGCCCG CTATTCACTAAGGATGTGGTGAAGAGTACACCTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCATTGCAGCTGCTCTGGAACTCATAGGAAGATCCCAGTTTTTGCAAACGCATGGAAGA ACCACGTGGCATGATGGAAGTGGTTCATTGCATGATGTTCAGCTCTCATTGCCATCCAGT CCAGAACCAGAAGACAGTGATCAAATATACAAGAATGAAGATTTGTTAAATGAAATAAAT CAACTTAAAGAGGAAATAAAGAAAAAAGATGAAAAAATCCAACTATTAGAACATCAGCTT GCAACTCGGTGTAACTGCAACCAAAAATCTAAAGAAGAAAAATGTACATATGCTGATAAA TATACCCAAACACCCTGGAGAAGAATTCCTCCTCCAGTACTACAGCCTTCCAGCAGCCTT CCCAGACCCACAGACCACGCCCAGGGAAAACTAATAAAGCCGCAACATATCGAGGCCCAC AGTGAGTGCACAGTCCAGAGCAAACATCAGGGTGTTGCACATCTGGACGAAGGCTTTACA CATGGCTTGCAACAGGAAAGCAACCATGGTCTGGAAGATCAGCCTTTTTCTCCGAGCCCG CTATTCACTAAGGATGTGGTGAAGAGTACACCTTCT |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 143-244, gnl|bosTau2|chr28 (29815179-29815280) | |
| 143-244, gnl|canFam2|chr4 (35897629-35897729) | |
| 143-244, gnl|canFam2|chr4 (35897637-35897706) | |
| 143-244, gnl|dasNov1|scaffold_8597 (43541-43445) | |
| 143-244, gnl|dasNov1|scaffold_8597 (43533-43468) | |
| 143-244, gnl|echTel1|scaffold_216741 (3047-2947) | |
| 143-244, gnl|echTel1|scaffold_216741 (3039-2970) | |
| 143-244, gnl|hg17|chr10 (86220099-86220199) | |
| 143-244, gnl|Hg17|chr10 (86220098-86220198) | |
| 143-244, gnl|hg17|chr9 (102359167-102359236) | |
| 143-244, gnl|loxAfr1|scaffold_14624 (8219-8119) | |
| 143-244, gnl|loxAfr1|scaffold_14624 (8211-8142) | |
| 143-244, gnl|mm7|chr14 (34325814-34325714) | |
| 143-244, gnl|mm7|chr14 (34325804-34325737) | |
| 143-244, gnl|Mm7|chr14 (34325814-34325713) | |
| 143-244, gnl|monDom2|scaffold_41 (12405284-12405384) | |
| 143-244, gnl|monDom2|scaffold_41 (12389723-12389800) | |
| 143-244, gnl|oryCun1|scaffold_175201 (50664-50719) | |
| 143-244, gnl|oryCun1|scaffold_206071 (171967-171867) | |
| 143-244, gnl|panTro1|chr11 (86609865-86609934) | |
| 143-244, gnl|panTro1|chr8 (87780327-87780427) | |
| 143-244, gnl|rheMac2|chr15 (33694862-33694793) | |
| 143-244, gnl|rheMac2|chr9 (52816024-52815924) | |
| 143-244, gnl|rn3|chr16 (13073951-13073851) | |
| 143-244, gnl|rn3|chr16 (13073941-13073874) | |
| 331-576, gnl|bosTau2|chr28 (29857898-29858143) | |
| 331-576, gnl|canFam2|chr4 (35937756-35938252) | |
| 331-576, gnl|canFam2|chr4 (35938017-35938468) | |
| 331-576, gnl|dasNov1|scaffold_29816 (7068-6624) | |
| 331-576, gnl|dasNov1|scaffold_8597 (43358-42910) | |
| 331-576, gnl|echTel1|scaffold_261245 (8723-8255) | |
| 331-576, gnl|echTel1|scaffold_261245 (8493-8039) | |
| 331-576, gnl|galGal2|chr6 (519699-520167) | |
| 331-576, gnl|galGal2|chr6 (519944-520380) | |
| 331-576, gnl|hg17|chr10 (86262930-86263421) | |
| 331-576, gnl|Hg17|chr10 (86263185-86263430) | |
| 331-576, gnl|hg17|chr9 (102359348-102359777) | |
| 331-576, gnl|loxAfr1|scaffold_7711 (44783-44285) | |
| 331-576, gnl|loxAfr1|scaffold_7711 (44520-44069) | |
| 331-576, gnl|mm7|chr14 (34307555-34307081) | |
| 331-576, gnl|mm7|chr14 (34307316-34306883) | |
| 331-576, gnl|Mm7|chr14 (34307315-34307070) | |
| 331-576, gnl|monDom2|scaffold_41 (12435048-12435537) | |
| 331-576, gnl|monDom2|scaffold_41 (12435299-12435741) | |
| 331-576, gnl|oryCun1|scaffold_175201 (50834-51271) | |
| 331-576, gnl|oryCun1|scaffold_210844 (48066-47581) | |
| 331-576, gnl|panTro1|chr11 (86610046-86610475) | |
| 331-576, gnl|panTro1|chr8_random (44905769-44906260) | |
| 331-576, gnl|rheMac2|chr15 (33694684-33694255) | |
| 331-576, gnl|rheMac2|chr9 (52778470-52777977) | |
| 331-576, gnl|rn3|chr16 (13056368-13055887) | |
| 331-576, gnl|rn3|chr16 (13056119-13055692) | |
| 331-576, gnl|xenTro1|scaffold_796 (563793-563287) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-244, gnl|bosTau2|chr28 (29815179-29815280) | |
| 143-244, gnl|canFam2|chr4 (35897629-35897729) | |
| 143-244, gnl|canFam2|chr4 (35897637-35897706) | |
| 143-244, gnl|dasNov1|scaffold_8597 (43541-43445) | |
| 143-244, gnl|dasNov1|scaffold_8597 (43533-43468) | |
| 143-244, gnl|echTel1|scaffold_216741 (3047-2947) | |
| 143-244, gnl|echTel1|scaffold_216741 (3039-2970) | |
| 143-244, gnl|hg17|chr10 (86220099-86220199) | |
| 143-244, gnl|Hg17|chr10 (86220098-86220198) | |
| 143-244, gnl|hg17|chr9 (102359167-102359236) | |
| 143-244, gnl|loxAfr1|scaffold_14624 (8219-8119) | |
| 143-244, gnl|loxAfr1|scaffold_14624 (8211-8142) | |
| 143-244, gnl|mm7|chr14 (34325814-34325714) | |
| 143-244, gnl|mm7|chr14 (34325804-34325737) | |
| 143-244, gnl|Mm7|chr14 (34325814-34325713) | |
| 143-244, gnl|monDom2|scaffold_41 (12405284-12405384) | |
| 143-244, gnl|monDom2|scaffold_41 (12389723-12389800) | |
| 143-244, gnl|oryCun1|scaffold_175201 (50664-50719) | |
| 143-244, gnl|oryCun1|scaffold_206071 (171967-171867) | |
| 143-244, gnl|panTro1|chr11 (86609865-86609934) | |
| 143-244, gnl|panTro1|chr8 (87780327-87780427) | |
| 143-244, gnl|rheMac2|chr15 (33694862-33694793) | |
| 143-244, gnl|rheMac2|chr9 (52816024-52815924) | |
| 143-244, gnl|rn3|chr16 (13073951-13073851) | |
| 143-244, gnl|rn3|chr16 (13073941-13073874) | |
| 331-576, gnl|bosTau2|chr28 (29857898-29858143) | |
| 331-576, gnl|canFam2|chr4 (35937756-35938252) | |
| 331-576, gnl|canFam2|chr4 (35938017-35938468) | |
| 331-576, gnl|dasNov1|scaffold_29816 (7068-6624) | |
| 331-576, gnl|dasNov1|scaffold_8597 (43358-42910) | |
| 331-576, gnl|echTel1|scaffold_261245 (8723-8255) | |
| 331-576, gnl|echTel1|scaffold_261245 (8493-8039) | |
| 331-576, gnl|galGal2|chr6 (519699-520167) | |
| 331-576, gnl|galGal2|chr6 (519944-520380) | |
| 331-576, gnl|hg17|chr10 (86262930-86263421) | |
| 331-576, gnl|Hg17|chr10 (86263185-86263430) | |
| 331-576, gnl|hg17|chr9 (102359348-102359777) | |
| 331-576, gnl|loxAfr1|scaffold_7711 (44783-44285) | |
| 331-576, gnl|loxAfr1|scaffold_7711 (44520-44069) | |
| 331-576, gnl|mm7|chr14 (34307555-34307081) | |
| 331-576, gnl|mm7|chr14 (34307316-34306883) | |
| 331-576, gnl|Mm7|chr14 (34307315-34307070) | |
| 331-576, gnl|monDom2|scaffold_41 (12435048-12435537) | |
| 331-576, gnl|monDom2|scaffold_41 (12435299-12435741) | |
| 331-576, gnl|oryCun1|scaffold_175201 (50834-51271) | |
| 331-576, gnl|oryCun1|scaffold_210844 (48066-47581) | |
| 331-576, gnl|panTro1|chr11 (86610046-86610475) | |
| 331-576, gnl|panTro1|chr8_random (44905769-44906260) | |
| 331-576, gnl|rheMac2|chr15 (33694684-33694255) | |
| 331-576, gnl|rheMac2|chr9 (52778470-52777977) | |
| 331-576, gnl|rn3|chr16 (13056368-13055887) | |
| 331-576, gnl|rn3|chr16 (13056119-13055692) | |
| 331-576, gnl|xenTro1|scaffold_796 (563793-563287) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) |