Ss1.1-rtes03_i17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTGGAGTGACAGCTGCGTGCACTGTCAGAAAACGCTGTCTGGTCCTGGGCAACTCAGC TGTGTCTGTGGAGCAGTGGAAAGCCCAGTTCAAGATGTGGTCCACCATTGATGACAGCCA GATCTGCCGCTTCACCTCCGATGCCAAGGACAAGCCCATAGGCTGTTCCATCGCCATCAG CACTTACTCCATGCTGGGCCACACCACCAAAAGGTCCTGGGAGGCTGAGCGGGTGATGGA ATGGCTGAAGACTCAAGAGTGGGGCCTCATGATCCTGGACGAAGTCCACACCATACCTGC CAAGATGTTCCGACGAGTGCTCACCATCGTGCAGGCCCACTGCAAACTGGGTTTGACTGC AACCCTTGTCCGGGAAGATGACAAGATCGTCGACTTGAACTTTCTGATCGGGCCCAAGCT CTATGAGGCCAACTGGATGGAGCTGCAGAACAACGGCTACATCGCCAAGGTCCAGTGTGC CGAGGTTTGGTGCCCGATGTCTCCTGAGTTTTACCGGGAATATGTGGCAATCAAAACCAA GAAACGAATCTTGCTGTACACCATGAACCCCAACAAATTCAGAGCGTGTCAGTTTCTGAT CAAGTTTCATGAGAGGAGGAACGACAAGATTATTGTCTTTGCTGACAATGTGTTTGCTCT GAAGGAATATGCCATTCGACTGAACAAGCCCTACATCTATGGTCCTACATCCCAGGGAGA AAGGATGCAGATTCTCCAGAATTTCAAGCACAACCCCAAAATCAACACCATCTTCATATC CAAGGTGGGTGACACATCGTTTGATCTGCCAGAGGCAAATGTCCTCATTCAGATCTCGTC TCATGGTGGCTCCCGGCGGCAAGAGGCCCAGAGGCTTGGGCGAGTGCTCCGGGCAAAGAA AGGGATGGTTGCAGAGGAGTACAATGCCTTCTTCTACTCGCTGGTCTCCCAGGACACACA GGAGATGGCTTACTCAACCAAGCGCCAGAGGTTCTTGGTAGATCAAGGTTACAGCTTTAA GGTGATCACAAAGCTTGCAGGCATGGAGGAGGAGGAGTTGGCATTCTCGACAAAAGAGGA GCAGCAGCAGCTCTTACAGAAGGTGCTGGCAGCCACTGACCTGGATGCTGAGGAGGAAGT GGTGGCAGGGGAATTTGGCTCCAGATCCAGCCAGGTTTCTCGGCGCTTTGGCACCATGAG TTCTATGTCTGGGGCCGATGACACGGTGTACATGGAGTACCACTCAGCCCGGAGCAAGGC GGCCACCAAGCACGTGCACCCGCTTTTCAAGCGCTTCAGGAAGTGACCCCCACAGGGTCA TGTGCTGGACATTCGTGCTCTGTCAGTAGCATCAGCTAACCAGTCTAGACTCAGTATCTA TGGACTGTTGAAGAAAATGCATCAAGAGCTTGAGTCTGTCTTCACGGGTCATCTAGATTT AAAAGTGGAAGTTGGTGGGACTATATATATATATATATTTGGGTTTTTTTAAGACTACTT TTCAAAATTGTTGGGGAGGTCATTCCTGTATATAAAAATTTGTAATACTTAAGTGTATTT TTCTTGATGTTCTCCTGAATAAACAGCAGTCGGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTGGAGTGACAGCTGCGTGCACTGTCAGAAAACGCTGTCTGGTCCTGGGCAACTCAGC TGTGTCTGTGGAGCAGTGGAAAGCCCAGTTCAAGATGTGGTCCACCATTGATGACAGCCA GATCTGCCGCTTCACCTCCGATGCCAAGGACAAGCCCATAGGCTGTTCCATCGCCATCAG CACTTACTCCATGCTGGGCCACACCACCAAAAGGTCCTGGGAGGCTGAGCGGGTGATGGA ATGGCTGAAGACTCAAGAGTGGGGCCTCATGATCCTGGACGAAGTCCACACCATACCTGC CAAGATGTTCCGACGAGTGCTCACCATCGTGCAGGCCCACTGCAAACTGGGTTTGACTGC AACCCTTGTCCGGGAAGATGACAAGATCGTCGACTTGAACTTTCTGATCGGGCCCAAGCT CTATGAGGCCAACTGGATGGAGCTGCAGAACAACGGCTACATCGCCAAGGTCCAGTGTGC CGAGGTTTGGTGCCCGATGTCTCCTGAGTTTTACCGGGAATATGTGGCAATCAAAACCAA GAAACGAATCTTGCTGTACACCATGAACCCCAACAAATTCAGAGCGTGTCAGTTTCTGAT CAAGTTTCATGAGAGGAGGAACGACAAGATTATTGTCTTTGCTGACAATGTGTTTGCTCT GAAGGAATATGCCATTCGACTGAACAAGCCCTACATCTATGGTCCTACATCCCAGGGAGA AAGGATGCAGATTCTCCAGAATTTCAAGCACAACCCCAAAATCAACACCATCTTCATATC CAAGGTGGGTGACACATCGTTTGATCTGCCAGAGGCAAATGTCCTCATTCAGATCTCGTC TCATGGTGGCTCCCGGCGGCAAGAGGCCCAGAGGCTTGGGCGAGTGCTCCGGGCAAAGAA AGGGATGGTTGCAGAGGAGTACAATGCCTTCTTCTACTCGCTGGTCTCCCAGGACACACA GGAGATGGCTTACTCAACCAAGCGCCAGAGGTTCTTGGTAGATCAAGGTTACAGCTTTAA GGTGATCACAAAGCTTGCAGGCATGGAGGAGGAGGAGTTGGCATTCTCGACAAAAGAGGA GCAGCAGCAGCTCTTACAGAAGGTGCTGGCAGCCACTGACCTGGATGCTGAGGAGGAAGT GGTGGCAGGGGAATTTGGCTCCAGATCCAGCCAGGTTTCTCGGCGCTTTGGCACCATGAG TTCTATGTCTGGGGCCGATGACACGGTGTACATGGAGTACCACTCAGCCCGGAGCAAGGC GGCCACCAAGCACGTGCACCCGCTTTTCAAGCGCTTCAGGAAGTGACCCCCACAGGGTCA TGTGCTGGACATTCGTGCTCTGTCAGTAGCATCAGCTAACCAGTCTAGACTCAGTATCTA TGGACTGTTGAAGAAAATGCATCAAGAGCTTGAGTCTGTCTTCACGGGTCATCTAGATTT AAAAGTGGAAGTTGGTGGGACTATATATATATATATATTTGGGTTTTTTTAAGACTACTT TTCAAAATTGTTGGGGAGGTCATTCCTGTATATAAAAATTTGTAATACTTAAGTGTATTT TTCTTGATGTTCTCCTGAATAAACAGCAGTCGGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-279, - strand, RNAz p=0.647642 | |
| 1059-1176, + strand, RNAz p=0.508393 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-279, - strand, RNAz p=0.647642 | |
| 1059-1176, + strand, RNAz p=0.508393 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-304, gnl|bosTau2|chr2 (1269618-1269921) | |
| 1-304, gnl|canFam2|chr19 (26334627-26334298) | |
| 1-304, gnl|danRer3|chr6 (24279244-24278922) | |
| 1-304, gnl|dasNov1|scaffold_9464 (42706-42377) | |
| 1-304, gnl|echTel1|scaffold_324081 (89224-88895) | |
| 1-304, gnl|fr1|chrUn (204327981-204327659) | |
| 1-304, gnl|galGal2|chr7 (24336659-24336337) | |
| 1-304, gnl|hg17|chr2 (127760498-127760827) | |
| 1-304, gnl|Hg17|chr2 (127760807-127760504) | |
| 1-304, gnl|loxAfr1|scaffold_117312 (877-1205) | |
| 1-304, gnl|mm7|chr18 (32640568-32640239) | |
| 1-304, gnl|Mm7|chr18 (32640257-32640560) | |
| 1-304, gnl|monDom2|scaffold_24 (43776850-43776521) | |
| 1-304, gnl|oryCun1|scaffold_176713 (35342-35029) | |
| 1-304, gnl|panTro1|chr13 (13875807-13876136) | |
| 1-304, gnl|rheMac2|chr13 (133732870-133733199) | |
| 1-304, gnl|rn3|chr18 (24719961-24719632) | |
| 1-304, gnl|tetNig1|chrUn_random (116715074-116714745) | |
| 1-304, gnl|xenTro1|scaffold_633 (277363-277684) | |
| 483-688, gnl|bosTau2|chr2 (1276864-1277069) | |
| 483-688, gnl|Hg17|chr2 (127753183-127752978) | |
| 483-688, gnl|Mm7|chr18 (32649266-32649471) | |
| 755-903, gnl|bosTau2|chr2 (1283309-1283457) | |
| 755-903, gnl|Hg17|chr2 (127745276-127745141) | |
| 755-903, gnl|Mm7|chr18 (32656596-32656744) | |
| 1006-1176, gnl|bosTau2|chr2 (1291224-1291395) | |
| 1006-1176, gnl|Hg17|chr2 (127733286-127733100) | |
| 1006-1176, gnl|Mm7|chr18 (32659218-32659396) | |
| 1329-1596, gnl|bosTau2|chr2 (1293146-1293416) | |
| 1329-1596, gnl|canFam2|chr19 (26353843-26354018) | |
| 1329-1596, gnl|hg17|chr4 (6619339-6619479) | |
| 1329-1596, gnl|oryCun1|scaffold_179787 (6552-6430) | |
| 1329-1596, gnl|panTro1|chr3 (6683870-6684010) | |
| 1329-1596, gnl|rheMac2|chr5 (2302901-2302753) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-304, gnl|bosTau2|chr2 (1269618-1269921) | |
| 1-304, gnl|canFam2|chr19 (26334627-26334298) | |
| 1-304, gnl|danRer3|chr6 (24279244-24278922) | |
| 1-304, gnl|dasNov1|scaffold_9464 (42706-42377) | |
| 1-304, gnl|echTel1|scaffold_324081 (89224-88895) | |
| 1-304, gnl|fr1|chrUn (204327981-204327659) | |
| 1-304, gnl|galGal2|chr7 (24336659-24336337) | |
| 1-304, gnl|hg17|chr2 (127760498-127760827) | |
| 1-304, gnl|Hg17|chr2 (127760807-127760504) | |
| 1-304, gnl|loxAfr1|scaffold_117312 (877-1205) | |
| 1-304, gnl|mm7|chr18 (32640568-32640239) | |
| 1-304, gnl|Mm7|chr18 (32640257-32640560) | |
| 1-304, gnl|monDom2|scaffold_24 (43776850-43776521) | |
| 1-304, gnl|oryCun1|scaffold_176713 (35342-35029) | |
| 1-304, gnl|panTro1|chr13 (13875807-13876136) | |
| 1-304, gnl|rheMac2|chr13 (133732870-133733199) | |
| 1-304, gnl|rn3|chr18 (24719961-24719632) | |
| 1-304, gnl|tetNig1|chrUn_random (116715074-116714745) | |
| 1-304, gnl|xenTro1|scaffold_633 (277363-277684) | |
| 483-688, gnl|bosTau2|chr2 (1276864-1277069) | |
| 483-688, gnl|Hg17|chr2 (127753183-127752978) | |
| 483-688, gnl|Mm7|chr18 (32649266-32649471) | |
| 755-903, gnl|bosTau2|chr2 (1283309-1283457) | |
| 755-903, gnl|Hg17|chr2 (127745276-127745141) | |
| 755-903, gnl|Mm7|chr18 (32656596-32656744) | |
| 1006-1176, gnl|bosTau2|chr2 (1291224-1291395) | |
| 1006-1176, gnl|Hg17|chr2 (127733286-127733100) | |
| 1006-1176, gnl|Mm7|chr18 (32659218-32659396) | |
| 1329-1596, gnl|bosTau2|chr2 (1293146-1293416) | |
| 1329-1596, gnl|canFam2|chr19 (26353843-26354018) | |
| 1329-1596, gnl|hg17|chr4 (6619339-6619479) | |
| 1329-1596, gnl|oryCun1|scaffold_179787 (6552-6430) | |
| 1329-1596, gnl|panTro1|chr3 (6683870-6684010) | |
| 1329-1596, gnl|rheMac2|chr5 (2302901-2302753) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cmu (0.55918) | |
| cje (0.495704) | |
| tes (0.415628) | |
| fty (0.351679) | |
| cbe (0.239234) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| spl (0.143184) | |
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.55918) | |
| cje (0.495704) | |
| tes (0.415628) | |
| fty (0.351679) | |
| cbe (0.239234) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| spl (0.143184) | |
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |