Non-Coding RNA Search

Ss1.1-rtes03_l15.5

Sequence:


               
               AGATCATGGCCAAAGCTGAAAAGAATAGGGTGAACATTACCTTTCCTGTTGACTTTGTCA
TTGCTGACAAGTTTGAGGAAAATGCTAAGGTTGGCCAGGCCACGGTAGCGTCAGGTATAC
CTGCCGGCTGGGTGGCTTTGGACTGTGGTCCTGAGACCAACAAGAAGTATGCACAAGTTG
TGGCCCGAGCCAAGCTAATTGTGTGGAATGGACCTTTACGGGTCTTTGAATGGGATGCCT
TTGCTAATGGAACGAAAGCCCTCATGGATGAAATTGTGAAAGCCACCTCCAAGGGCTGTA
TCACTATTATAGGAGGTGGAGACACGGCCACTTGCTGTGCCAAATGGAACACTGAAGATA
AAGTCAGTCATGTGAGCACTGGAGGAGGTGCCAGTCTAGAGCTTCTGGAAGGTAAAGTCC
TTCCTGGAGTGGAGGCTCTCAGCAATCTGTAGTTGATAGTGTTCCTTCCTGTTGTTTTCT
ATGCACAGCCTTTAAGTCAACTTAGTGCTTTTACATCTCAACTTGACTTTTGTTAAAATC
TACCCCTCCATCAAGACTCAGGCAAAGACCAAGGAATGGGCCATCAGGAACTCTTAACAT
CAGCTTAACAGTACAACTCATTTTTGTTCTGTGATGCATTTGCCTACTGTCTTAAAGATC
TCATTTGAACTTCACTGTTGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCATGGCCAAAGCTGAAAAGAATAGGGTGAACATTACCTTTCCTGTTGACTTTGTCA
TTGCTGACAAGTTTGAGGAAAATGCTAAGGTTGGCCAGGCCACGGTAGCGTCAGGTATAC
CTGCCGGCTGGGTGGCTTTGGACTGTGGTCCTGAGACCAACAAGAAGTATGCACAAGTTG
TGGCCCGAGCCAAGCTAATTGTGTGGAATGGACCTTTACGGGTCTTTGAATGGGATGCCT
TTGCTAATGGAACGAAAGCCCTCATGGATGAAATTGTGAAAGCCACCTCCAAGGGCTGTA
TCACTATTATAGGAGGTGGAGACACGGCCACTTGCTGTGCCAAATGGAACACTGAAGATA
AAGTCAGTCATGTGAGCACTGGAGGAGGTGCCAGTCTAGAGCTTCTGGAAGGTAAAGTCC
TTCCTGGAGTGGAGGCTCTCAGCAATCTGTAGTTGATAGTGTTCCTTCCTGTTGTTTTCT
ATGCACAGCCTTTAAGTCAACTTAGTGCTTTTACATCTCAACTTGACTTTTGTTAAAATC
TACCCCTCCATCAAGACTCAGGCAAAGACCAAGGAATGGGCCATCAGGAACTCTTAACAT
CAGCTTAACAGTACAACTCATTTTTGTTCTGTGATGCATTTGCCTACTGTCTTAAAGATC
TCATTTGAACTTCACTGTTGTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-441, + strand, RNAz p=0.913618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-441, + strand, RNAz p=0.913618

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_138733, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138733, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-684, gnl|bosTau2|chr23 (19647176-19647864)
               

               
               3-684, gnl|Hg17|chr6 (49862055-49861382)
               

               
               3-684, gnl|Mm7|chr17 (38248194-38247536)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-684, gnl|bosTau2|chr23 (19647176-19647864)
               

               
               3-684, gnl|Hg17|chr6 (49862055-49861382)
               

               
               3-684, gnl|Mm7|chr17 (38248194-38247536)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (1.17096)
               

               
               tes (0.415628)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               tes (0.415628)

	3-684, gnl\|bosTau2\|chr23 (19647176-19647864)
	3-684, gnl\|Hg17\|chr6 (49862055-49861382)
	3-684, gnl\|Mm7\|chr17 (38248194-38247536)