Non-Coding RNA Search

Ss1.1-rtes03_l21.5

Sequence:


               
               CGAGCGGTTCCCCATCAGCTTCAAAACCTACTTCTCAGGAAACTACTTTCACCACGTCGT
GCTGGGGATTTACTGCAATGGCCGCTACGGCTCGCTGGGCATGAGCCGAAGGGCTGAGCT
GATGGACAAGCCACTGACCTTTCGGACTCTGAGTGACCTCATCTTTGACTTCGAGGATTC
CTACAAGAAATACCTGCACACACTCAAGAAGGTCAAGATTGGGCTGTATGTGCCCCATGA
GCCTCATAGCTTCCAGCCCATCGAGTGGAAGCAGCTGGTCCTCAATGTTTCAAAGATGCT
GAGGGCCGATGTGAGGAAGGAGCTGGAGAAGTATGCCAGGGACATGAGAATGAAGATCCT
GAAACCTGCAAGTGCCCACTCTCCAACTCAAGTGAGAAGCCGGGGAAAATCCCTGTCCCC
CCGAAGGAGACAGGCGAGCCCCCCAAGACGGCTCGGCAGACGAGACAAGTCGCCGGCACT
GCCTGAAAAGAAGGTGGCTGATCTCAGCACTCTGAATGAAGTGGGCTATCAGATCCGAAT
TTAGTCCAGCCATACAGCCAGCAACAGGGCTTCTCTGGTGCTTCCCTCTGCACTTTACCC
AGCATCTTCAGGAGGAACTGCAACTATTTATTAAGAACTTGTGGCTTTTATTTTTAAGCA
TTCACTTGGAAATAGACTCTGAGTGGGTGGTAACAATTTAAAAAAATTCACGAAGGGACA
ACCACGCAAAGGCTAAGTAATAAACCCCACTGGGGCTGGACTGTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCGGTTCCCCATCAGCTTCAAAACCTACTTCTCAGGAAACTACTTTCACCACGTCGT
GCTGGGGATTTACTGCAATGGCCGCTACGGCTCGCTGGGCATGAGCCGAAGGGCTGAGCT
GATGGACAAGCCACTGACCTTTCGGACTCTGAGTGACCTCATCTTTGACTTCGAGGATTC
CTACAAGAAATACCTGCACACACTCAAGAAGGTCAAGATTGGGCTGTATGTGCCCCATGA
GCCTCATAGCTTCCAGCCCATCGAGTGGAAGCAGCTGGTCCTCAATGTTTCAAAGATGCT
GAGGGCCGATGTGAGGAAGGAGCTGGAGAAGTATGCCAGGGACATGAGAATGAAGATCCT
GAAACCTGCAAGTGCCCACTCTCCAACTCAAGTGAGAAGCCGGGGAAAATCCCTGTCCCC
CCGAAGGAGACAGGCGAGCCCCCCAAGACGGCTCGGCAGACGAGACAAGTCGCCGGCACT
GCCTGAAAAGAAGGTGGCTGATCTCAGCACTCTGAATGAAGTGGGCTATCAGATCCGAAT
TTAGTCCAGCCATACAGCCAGCAACAGGGCTTCTCTGGTGCTTCCCTCTGCACTTTACCC
AGCATCTTCAGGAGGAACTGCAACTATTTATTAAGAACTTGTGGCTTTTATTTTTAAGCA
TTCACTTGGAAATAGACTCTGAGTGGGTGGTAACAATTTAAAAAAATTCACGAAGGGACA
ACCACGCAAAGGCTAAGTAATAAACCCCACTGGGGCTGGACTGTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887867|ref|XP_611778.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887867|ref|XP_611778.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-358, + strand, RNAz p=0.954829

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, + strand, RNAz p=0.954829

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-358, gnl|bosTau2|chr16 (52680720-52680363)
               

               
               1-358, gnl|Hg17|chr1 (209534344-209534701)
               

               
               1-358, gnl|Mm7|chr1 (190513958-190513601)
               


               
               472-765, gnl|bosTau2|chr16 (52665280-52664992)
               

               
               472-765, gnl|Hg17|chr1 (209550249-209550550)
               

               
               472-765, gnl|Mm7|chr1 (190503762-190503493)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-358, gnl|bosTau2|chr16 (52680720-52680363)
               

               
               1-358, gnl|Hg17|chr1 (209534344-209534701)
               

               
               1-358, gnl|Mm7|chr1 (190513958-190513601)
               


               
               472-765, gnl|bosTau2|chr16 (52665280-52664992)
               

               
               472-765, gnl|Hg17|chr1 (209550249-209550550)
               

               
               472-765, gnl|Mm7|chr1 (190503762-190503493)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-358, gnl\|bosTau2\|chr16 (52680720-52680363)
	1-358, gnl\|Hg17\|chr1 (209534344-209534701)
	1-358, gnl\|Mm7\|chr1 (190513958-190513601)

	472-765, gnl\|bosTau2\|chr16 (52665280-52664992)
	472-765, gnl\|Hg17\|chr1 (209550249-209550550)
	472-765, gnl\|Mm7\|chr1 (190503762-190503493)