Ss1.1-rtes03_p13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGCTTCTTTTGAGTGCTGTTCGGGGCCTTTGGGCCCACCGGGCTGTTGGCCCGGCCC GCCGACACATGAGCTGCGGGAGCCTTCCGCTGGAGGAGCTGTTCGCCCGCAGCGGACCCC TGCGGACCTTCCTCGAGCGCCAGGTAGGGTCTGAAACCCCGTTGCAGGTCAGAGGGCCTG AGCTGGTGGCGGTGGCCAAGCTTCTGACAGAGAAGGAGCGGGAGCTGCAGGAGACCGAGC ACTTGCTGCACGATGAAAGTGAAGACTTAAGGAAACTTGCAGAGAATGTTTGAGTATTAA TTATAGGAGGAGTGATATTTTTGTATTTGCAGATCGTCTTACTTTTGGTTCCCTCAGAAG AAGCAGATGAAAATGACTTGATCCTGGAGGTAACTGCAGGAGTTGGGGGTCAGGAGGCAA TGCTGTTTACTTCAGAGATATTTGATATGTATCAGCAGTATGCTGCATTTAAAAGATGGC ATTTTGAAATCCTGGAATATTTTCCTAGTGAAATAGGTGGCCTTAGACATGCATCTGCCA GCATTGGGGGTTCAGAAGCCTATAAGCACATGAAGTTTGAAGGAGGTGTGCACAGAGTAC AGAGAGTGCCAAAGACGGAGAAGCAAGGCCGCATCCACACCAGCACCATGACTGTTGCAA TCCTGCCCCAACCCACTGAGATTAATCTGGTGATTAATCCTAAAGATTTGAGGATTGATA CTAAGCGAGCCAGTGGAGCTGGGGGGCAGCACGTAAACACCACAGACAGCGCCGTCCGGA TAGTTCATCTTCCCACAGGTGTTGTTTCCGAATGCCAGCAGGAGAGATCTCAACTGAAAA ATAGAGAGATGGCTATGAAAAAGTTACGTGCAAAACTATACAGCCTGCATCTAGAAGAAG AAACGAGTAAACGATACAATGCTAGAAAGGTTCAGGTTGGTACTAAAGGAAGGTCAGAGA AAATAAGAACATACAATTTTCCACAGAATCGGGTCACGGATCACCGAATAAACAAGTCAC TTTATGATCTTGGAACTTTTATGCAAGGAGAGTATCTACTGGATGAACTTGTACAGTCAC TGAAGGACTATGCTAATTACGAATCTGTACTAGAAATCATTTCCCAAAAAATTTAAGTTG AATTGTTATTAAAGACTTGTATAGCTTGTGAAAGTTCTATTATAGTAGTCACATTGTGTA AATACCAGTATTCTCTTGAAACACATAAGTTAACATGGCTGGGAGTAATGTATTTTTAAT ATGTAGATAATTTATATAAATCTCTCAATGTATTAAAAAATATATAATCATGAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGCTTCTTTTGAGTGCTGTTCGGGGCCTTTGGGCCCACCGGGCTGTTGGCCCGGCCC GCCGACACATGAGCTGCGGGAGCCTTCCGCTGGAGGAGCTGTTCGCCCGCAGCGGACCCC TGCGGACCTTCCTCGAGCGCCAGGTAGGGTCTGAAACCCCGTTGCAGGTCAGAGGGCCTG AGCTGGTGGCGGTGGCCAAGCTTCTGACAGAGAAGGAGCGGGAGCTGCAGGAGACCGAGC ACTTGCTGCACGATGAAAGTGAAGACTTAAGGAAACTTGCAGAGAATGTTTGAGTATTAA TTATAGGAGGAGTGATATTTTTGTATTTGCAGATCGTCTTACTTTTGGTTCCCTCAGAAG AAGCAGATGAAAATGACTTGATCCTGGAGGTAACTGCAGGAGTTGGGGGTCAGGAGGCAA TGCTGTTTACTTCAGAGATATTTGATATGTATCAGCAGTATGCTGCATTTAAAAGATGGC ATTTTGAAATCCTGGAATATTTTCCTAGTGAAATAGGTGGCCTTAGACATGCATCTGCCA GCATTGGGGGTTCAGAAGCCTATAAGCACATGAAGTTTGAAGGAGGTGTGCACAGAGTAC AGAGAGTGCCAAAGACGGAGAAGCAAGGCCGCATCCACACCAGCACCATGACTGTTGCAA TCCTGCCCCAACCCACTGAGATTAATCTGGTGATTAATCCTAAAGATTTGAGGATTGATA CTAAGCGAGCCAGTGGAGCTGGGGGGCAGCACGTAAACACCACAGACAGCGCCGTCCGGA TAGTTCATCTTCCCACAGGTGTTGTTTCCGAATGCCAGCAGGAGAGATCTCAACTGAAAA ATAGAGAGATGGCTATGAAAAAGTTACGTGCAAAACTATACAGCCTGCATCTAGAAGAAG AAACGAGTAAACGATACAATGCTAGAAAGGTTCAGGTTGGTACTAAAGGAAGGTCAGAGA AAATAAGAACATACAATTTTCCACAGAATCGGGTCACGGATCACCGAATAAACAAGTCAC TTTATGATCTTGGAACTTTTATGCAAGGAGAGTATCTACTGGATGAACTTGTACAGTCAC TGAAGGACTATGCTAATTACGAATCTGTACTAGAAATCATTTCCCAAAAAATTTAAGTTG AATTGTTATTAAAGACTTGTATAGCTTGTGAAAGTTCTATTATAGTAGTCACATTGTGTA AATACCAGTATTCTCTTGAAACACATAAGTTAACATGGCTGGGAGTAATGTATTTTTAAT ATGTAGATAATTTATATAAATCTCTCAATGTATTAAAAAATATATAATCATGAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 796-914, - strand, RNAz p=0.709237 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 796-914, - strand, RNAz p=0.709237 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 10-250, gnl|bosTau2|chr9 (50944729-50944489) | |
| 10-250, gnl|canFam2|chr1 (46211647-46211913) | |
| 10-250, gnl|canFam2|chr1 (46211891-46211701) | |
| 10-250, gnl|dasNov1|scaffold_108542 (5923-6108) | |
| 10-250, gnl|dasNov1|scaffold_7213 (74679-74413) | |
| 10-250, gnl|echTel1|scaffold_308175 (8317-8066) | |
| 10-250, gnl|echTel1|scaffold_308175 (8090-8263) | |
| 10-250, gnl|galGal2|chr3 (48576685-48576910) | |
| 10-250, gnl|galGal2|chr3 (48576899-48576742) | |
| 10-250, gnl|hg17|chr4 (190034675-190034865) | |
| 10-250, gnl|hg17|chr6 (153415672-153415938) | |
| 10-250, gnl|Hg17|chr6 (153415918-153415678) | |
| 10-250, gnl|loxAfr1|scaffold_22072 (8005-8272) | |
| 10-250, gnl|loxAfr1|scaffold_22072 (8250-8060) | |
| 10-250, gnl|mm7|chr10 (4523271-4523026) | |
| 10-250, gnl|mm7|chr10 (4523046-4523217) | |
| 10-250, gnl|Mm7|chr10 (4523041-4523263) | |
| 10-250, gnl|monDom2|scaffold_0 (52567119-52566844) | |
| 10-250, gnl|monDom2|scaffold_0 (52566866-52567065) | |
| 10-250, gnl|oryCun1|scaffold_186692 (5504-5238) | |
| 10-250, gnl|oryCun1|scaffold_202291 (40424-40234) | |
| 10-250, gnl|panTro1|chr5 (156943772-156944038) | |
| 10-250, gnl|panTro1|chr5_random (12704466-12704656) | |
| 10-250, gnl|rheMac2|chr4 (110040514-110040248) | |
| 10-250, gnl|rheMac2|chr4 (110040270-110040460) | |
| 10-250, gnl|rn3|chr1 (36519543-36519788) | |
| 10-250, gnl|rn3|chr1 (36519766-36519597) | |
| 289-518, gnl|bosTau2|chr9 (50939895-50939667) | |
| 289-518, gnl|Hg17|chr6 (153408612-153408383) | |
| 289-518, gnl|Mm7|chr10 (4527761-4527992) | |
| 796-937, gnl|bosTau2|chr7 (14847934-14848075) | |
| 796-937, gnl|Hg17|chr6 (153404573-153404432) | |
| 796-937, gnl|Mm7|chr10 (4532611-4532752) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-250, gnl|bosTau2|chr9 (50944729-50944489) | |
| 10-250, gnl|canFam2|chr1 (46211647-46211913) | |
| 10-250, gnl|canFam2|chr1 (46211891-46211701) | |
| 10-250, gnl|dasNov1|scaffold_108542 (5923-6108) | |
| 10-250, gnl|dasNov1|scaffold_7213 (74679-74413) | |
| 10-250, gnl|echTel1|scaffold_308175 (8317-8066) | |
| 10-250, gnl|echTel1|scaffold_308175 (8090-8263) | |
| 10-250, gnl|galGal2|chr3 (48576685-48576910) | |
| 10-250, gnl|galGal2|chr3 (48576899-48576742) | |
| 10-250, gnl|hg17|chr4 (190034675-190034865) | |
| 10-250, gnl|hg17|chr6 (153415672-153415938) | |
| 10-250, gnl|Hg17|chr6 (153415918-153415678) | |
| 10-250, gnl|loxAfr1|scaffold_22072 (8005-8272) | |
| 10-250, gnl|loxAfr1|scaffold_22072 (8250-8060) | |
| 10-250, gnl|mm7|chr10 (4523271-4523026) | |
| 10-250, gnl|mm7|chr10 (4523046-4523217) | |
| 10-250, gnl|Mm7|chr10 (4523041-4523263) | |
| 10-250, gnl|monDom2|scaffold_0 (52567119-52566844) | |
| 10-250, gnl|monDom2|scaffold_0 (52566866-52567065) | |
| 10-250, gnl|oryCun1|scaffold_186692 (5504-5238) | |
| 10-250, gnl|oryCun1|scaffold_202291 (40424-40234) | |
| 10-250, gnl|panTro1|chr5 (156943772-156944038) | |
| 10-250, gnl|panTro1|chr5_random (12704466-12704656) | |
| 10-250, gnl|rheMac2|chr4 (110040514-110040248) | |
| 10-250, gnl|rheMac2|chr4 (110040270-110040460) | |
| 10-250, gnl|rn3|chr1 (36519543-36519788) | |
| 10-250, gnl|rn3|chr1 (36519766-36519597) | |
| 289-518, gnl|bosTau2|chr9 (50939895-50939667) | |
| 289-518, gnl|Hg17|chr6 (153408612-153408383) | |
| 289-518, gnl|Mm7|chr10 (4527761-4527992) | |
| 796-937, gnl|bosTau2|chr7 (14847934-14848075) | |
| 796-937, gnl|Hg17|chr6 (153404573-153404432) | |
| 796-937, gnl|Mm7|chr10 (4532611-4532752) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| aor (0.390549) | |
| gul (0.355177) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ldo (0.0970026) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| gul (0.355177) | |
| spc (0.340097) | |
| vin (0.332557) | |
| isp (0.300752) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ldo (0.0970026) |