Non-Coding RNA Search

Ss1.1-rtes04_d17.5

Sequence:


               
               ACAGGTCTTCTGTGTACAGCTAAAACCCAAATAATCGTGGTGGACCGGTTCTTCGTGCGT
TGGGATTTGTGGGTAAAGACAAGAAGAGAGCAAAGAATCTGCTGATGTGGCTGTACTCGC
TTCTAGTGACTTAGATTAACGGCTTGAAATACGTAGTTGGATTTTGAGTGCACTGTTGCA
GGGGAGATGTTTGTTTCTAAATGCTCCTAACAGACTCTGCTTTTGGAAAATGCTTATCAT
TACATGGATGCCTTCTTGACCAGGGATTGCTTTTCTGAAGGCAGTATGGGGAAAGTGAAT
GTTCAGGATGAACAATGAAAATCATGTTTAAAGGTCAGTATGTAAATAGCCTCCTAGCAT
ACCTTGTGTGTATCCGTTAAGACTTGGGGGAAGGGTCAGGGGCTGTGCATGCCTTGTGCA
GAAAGAAGACACGGCCGTGAAGGACAGAGTCTTTTCCGATCCCCCGCGTCCCACAACCAA
ACATAAATAAGGTGGTTAGTTTTGGTTAGTAAGTGGGATTCACCACGGATGAAGGCTCAT
AACAGGGAGGGGCAGAAGCCCCAGTAAATTAGCAAAGCAGAAGTAGTATCTCTTTCGCTT
TCGGAGGTGGTTTGGAATTTTAGGTGTATACTTGAAACTATGGTGATTTAGTGCCCTGTA
ACCTAAGACAGTGTTATTATTAGAGCCCTTCTGATAAGTGCTCTCCCAGAGCAGGTGTAT
GCCTATTAGACATTAGCAGTGAAGTTCCTTCACTATTGGGTGAATTATTACATATAAAAA
TAATTATCAACCAGGCAAACTACTTTGCTGCCTGATGTCATCCCACATGGGTACAGGTGT
TACACAGCTCTGCCTGGCCCAGCAGGAAAGCCAGATGGGACCAGTGTGTCTGTTACGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTCTTCTGTGTACAGCTAAAACCCAAATAATCGTGGTGGACCGGTTCTTCGTGCGT
TGGGATTTGTGGGTAAAGACAAGAAGAGAGCAAAGAATCTGCTGATGTGGCTGTACTCGC
TTCTAGTGACTTAGATTAACGGCTTGAAATACGTAGTTGGATTTTGAGTGCACTGTTGCA
GGGGAGATGTTTGTTTCTAAATGCTCCTAACAGACTCTGCTTTTGGAAAATGCTTATCAT
TACATGGATGCCTTCTTGACCAGGGATTGCTTTTCTGAAGGCAGTATGGGGAAAGTGAAT
GTTCAGGATGAACAATGAAAATCATGTTTAAAGGTCAGTATGTAAATAGCCTCCTAGCAT
ACCTTGTGTGTATCCGTTAAGACTTGGGGGAAGGGTCAGGGGCTGTGCATGCCTTGTGCA
GAAAGAAGACACGGCCGTGAAGGACAGAGTCTTTTCCGATCCCCCGCGTCCCACAACCAA
ACATAAATAAGGTGGTTAGTTTTGGTTAGTAAGTGGGATTCACCACGGATGAAGGCTCAT
AACAGGGAGGGGCAGAAGCCCCAGTAAATTAGCAAAGCAGAAGTAGTATCTCTTTCGCTT
TCGGAGGTGGTTTGGAATTTTAGGTGTATACTTGAAACTATGGTGATTTAGTGCCCTGTA
ACCTAAGACAGTGTTATTATTAGAGCCCTTCTGATAAGTGCTCTCCCAGAGCAGGTGTAT
GCCTATTAGACATTAGCAGTGAAGTTCCTTCACTATTGGGTGAATTATTACATATAAAAA
TAATTATCAACCAGGCAAACTACTTTGCTGCCTGATGTCATCCCACATGGGTACAGGTGT
TACACAGCTCTGCCTGGCCCAGCAGGAAAGCCAGATGGGACCAGTGTGTCTGTTACGAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               12-379, gnl|bosTau2|chr4 (37056905-37056554)
               

               
               12-379, gnl|Hg17|chr7 (29734412-29734054)
               

               
               12-379, gnl|Mm7|chr6 (54470536-54470212)
               


               
               412-900, gnl|bosTau2|chr4 (37056549-37056057)
               

               
               412-900, gnl|Hg17|chr7 (29734049-29733528)
               

               
               412-900, gnl|Mm7|chr6 (54470183-54469730)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-379, gnl|bosTau2|chr4 (37056905-37056554)
               

               
               12-379, gnl|Hg17|chr7 (29734412-29734054)
               

               
               12-379, gnl|Mm7|chr6 (54470536-54470212)
               


               
               412-900, gnl|bosTau2|chr4 (37056549-37056057)
               

               
               412-900, gnl|Hg17|chr7 (29734049-29733528)
               

               
               412-900, gnl|Mm7|chr6 (54470183-54469730)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               ecc (0.115035)

	12-379, gnl\|bosTau2\|chr4 (37056905-37056554)
	12-379, gnl\|Hg17\|chr7 (29734412-29734054)
	12-379, gnl\|Mm7\|chr6 (54470536-54470212)

	412-900, gnl\|bosTau2\|chr4 (37056549-37056057)
	412-900, gnl\|Hg17\|chr7 (29734049-29733528)
	412-900, gnl\|Mm7\|chr6 (54470183-54469730)