Non-Coding RNA Search

Ss1.1-rtes04_h1.5

Sequence:


               
               ATTTGATGCTTTAACTGATGACTAGCAGTTGAATGGTCATGCAGTCCAGTTGTATAAATG
CAGAGGGACCTTGCTACCAGGTATGACCTTTCAAGTTAAAAATCTGAATTGTTCTAAGCA
GATAGAAGAAAAAGTGGCAATTTGTGCCCTTCACTGGGGATATTCCTCTAGGACTGGTTG
GGGAGGTGTGGAAATGACTCTTAGGCAAGGGGATGAGCTCTTAGGAGGAGGGGGTGGTGG
GGTGGAGGTGTTCTGGGAATGCTGGGGGGTGGTGGGGTTGCCTCCTCAGGTGGGGGGTGA
AGGAGGGGTGCAGTTTCACTGGTCTCGGGGAGATGGGGGAGGCTTTCAGCTGCTTTGCAG
AAGCGGCCCCTGTGGGTCCTGGCCATCAGTGCCAACCACAGACGTGGCCCCCGCCTGCTC
GCCCACCCGCCTGCCCCCGCCCCCAGCACTTGCAGAACTGCCTGAACGCACATGATCTAG
CCCTTGCCCACTGCGTGTATCCAGAAGTGGCCCTTGGCAGAGCACTGAGCTTGCTCACCC
CTAGATGTCCAAGTGCCACGTGAACTATGCAATTTAAAGGGTTGACCCCCACTAGACGAA
ACTGGACTCGTCCGACTCTTTTTATATTTTTTTATACTTGAAATGAAATCCTTTGCTTCT
TTTTTAAGCGAATGATTGCTTTTAATGTTTGCACTGATTTAGTTGCATGATTAGTCAGAA
ACTGCCATTTGAAAAAAGAAGTTATTTTTATAGCAGCAAAAAAGAAATACAGTTAAATGT
ATTATACATAATTTTGGAACCAAAGAGGCCAACAGATCAGTTTTAATTTTTATTAGGTGG
TAAGGCCATCTTACATGAGGTGGATGTTCCAAACTCCCTTGAGTGGCCTGCCTACGTTTC
AGGGTATAAATGGATTTTGTTTATTCAGTTTGATGTGTCTTTTCTATCCTTACACACCCA
GAAGGTAGAGTAAAAAACGATGGTGGTAGAAGGCAGGTGTGTATCCTTAAATCCCCATCT
TTATGTTTATTTAATAAAGCTCCCCTTAGGTTCTGTTTCATAATAATTTAAAACCAAACA
ATTTTCCCATAGACTCGCTGTTAAAGTATTTTACGTTTGTGTACAGTTTAAGAAAATAAA
AGATGGAGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGATGCTTTAACTGATGACTAGCAGTTGAATGGTCATGCAGTCCAGTTGTATAAATG
CAGAGGGACCTTGCTACCAGGTATGACCTTTCAAGTTAAAAATCTGAATTGTTCTAAGCA
GATAGAAGAAAAAGTGGCAATTTGTGCCCTTCACTGGGGATATTCCTCTAGGACTGGTTG
GGGAGGTGTGGAAATGACTCTTAGGCAAGGGGATGAGCTCTTAGGAGGAGGGGGTGGTGG
GGTGGAGGTGTTCTGGGAATGCTGGGGGGTGGTGGGGTTGCCTCCTCAGGTGGGGGGTGA
AGGAGGGGTGCAGTTTCACTGGTCTCGGGGAGATGGGGGAGGCTTTCAGCTGCTTTGCAG
AAGCGGCCCCTGTGGGTCCTGGCCATCAGTGCCAACCACAGACGTGGCCCCCGCCTGCTC
GCCCACCCGCCTGCCCCCGCCCCCAGCACTTGCAGAACTGCCTGAACGCACATGATCTAG
CCCTTGCCCACTGCGTGTATCCAGAAGTGGCCCTTGGCAGAGCACTGAGCTTGCTCACCC
CTAGATGTCCAAGTGCCACGTGAACTATGCAATTTAAAGGGTTGACCCCCACTAGACGAA
ACTGGACTCGTCCGACTCTTTTTATATTTTTTTATACTTGAAATGAAATCCTTTGCTTCT
TTTTTAAGCGAATGATTGCTTTTAATGTTTGCACTGATTTAGTTGCATGATTAGTCAGAA
ACTGCCATTTGAAAAAAGAAGTTATTTTTATAGCAGCAAAAAAGAAATACAGTTAAATGT
ATTATACATAATTTTGGAACCAAAGAGGCCAACAGATCAGTTTTAATTTTTATTAGGTGG
TAAGGCCATCTTACATGAGGTGGATGTTCCAAACTCCCTTGAGTGGCCTGCCTACGTTTC
AGGGTATAAATGGATTTTGTTTATTCAGTTTGATGTGTCTTTTCTATCCTTACACACCCA
GAAGGTAGAGTAAAAAACGATGGTGGTAGAAGGCAGGTGTGTATCCTTAAATCCCCATCT
TTATGTTTATTTAATAAAGCTCCCCTTAGGTTCTGTTTCATAATAATTTAAAACCAAACA
ATTTTCCCATAGACTCGCTGTTAAAGTATTTTACGTTTGTGTACAGTTTAAGAAAATAAA
AGATGGAGTGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               325-440, - strand, RNAz p=0.729572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-440, - strand, RNAz p=0.729572

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               93-1152, gnl|bosTau2|chr2 (45853525-45852480)
               

               
               93-1152, gnl|Hg17|chr2 (120824545-120825608)
               

               
               93-1152, gnl|Mm7|chr1 (119276994-119275988)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-1152, gnl|bosTau2|chr2 (45853525-45852480)
               

               
               93-1152, gnl|Hg17|chr2 (120824545-120825608)
               

               
               93-1152, gnl|Mm7|chr1 (119276994-119275988)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ova (1.93698)
               

               
               bfe (0.299715)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (1.93698)
               

               
               bfe (0.299715)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

	93-1152, gnl\|bosTau2\|chr2 (45853525-45852480)
	93-1152, gnl\|Hg17\|chr2 (120824545-120825608)
	93-1152, gnl\|Mm7\|chr1 (119276994-119275988)

	ova (1.93698)
	bfe (0.299715)
	pan (0.23596)
	tes (0.207814)
	nep (0.183925)
	fbs (0.175346)
	cut (0.169924)
	mga (0.160205)
	ski (0.146735)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)