Ss1.1-rtes04_i13.5
|
GGGCACACCCTTCTTTTCTTTCTATTTCGTGCCTAGTTAAGTGGGAATGTGTTTGGAGGT
AGGGGAATCACGCAGCTGGTGCAAGCGGGGGTTAACTGCGTAGCCACGCCTGGTGGAAGC
CTGACAGTGTCTCTGCACACAGCCTCTGACAACAGCCCATCCCAGGAGCCAGGTGAAGCC
ATTCCCCGCCACCTCTCCCCTGAGCACTGGAGTCTTAAAAGACCCAGGGAGGATCCACTG
CTTTTCCCAGGAGGCTCCAGGATTAGGAAGCGTGTGTATTTTAGTGAAATATAGGTTTGT
AGTGAAATAGTTACTATTTCATGAAAGTAGATATTTTTAGAATTTTTGAAATACCACAGT
TGTTTTCCTGGATTATGAGGAAAGGCACATTACATTTAGTCTTCCTTTCAATAAAACTCT
TTGAAGAAATAAGATTTTTAGAAATCAACTGCCCATTATAGCACAAAAATCAGCCAAAGC
AGAATTTAAAAGAATTGGCTTTTTAAGGTTCTTTTATTTTCCTTCTCCCATTTCAATCTT
ATCTTGAGGGAACAGCAGTCTTGCGAAAGAACTTTGTCGTGTCTGATCTGTGGTGTGTTC
CATGCCTACACACACTGGTGACTCCAGGAACTATTTCCACCTATTACCAGCGTTCCCTTG
GAACTCCTCTTAATGGTTCCAAATGCAGAGGAAAGTTTGCTTTCCTTCATGAGGCTTTTT
GTTTTGGGGGGTTTTTTGGTCCAAAAATATTTTCAGCAAAACTTTCCAACTCAGTGGAGT
TTTATTAAGAATTTCTTTGAAAATGATGGAGTTCATTGGCGCATAGGTACATTGGAAAAT
GTATCTATCTTCTTCCCAGCTGTACTGTAGTGCCCTGCAGGCTTGTTTATATGTTCACAG
TTACTTTTTTTTTTTTTTTAATAAAAGTCATTTACTGTAGAATACTTTTAATTTCACTTT
CTGTATTTTAATTTTGTTGAAGGGCTGATTGGGATTTCCATGTTCTTATTAAAAATCTAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGCACACCCTTCTTTTCTTTCTATTTCGTGCCTAGTTAAGTGGGAATGTGTTTGGAGGT
AGGGGAATCACGCAGCTGGTGCAAGCGGGGGTTAACTGCGTAGCCACGCCTGGTGGAAGC
CTGACAGTGTCTCTGCACACAGCCTCTGACAACAGCCCATCCCAGGAGCCAGGTGAAGCC
ATTCCCCGCCACCTCTCCCCTGAGCACTGGAGTCTTAAAAGACCCAGGGAGGATCCACTG
CTTTTCCCAGGAGGCTCCAGGATTAGGAAGCGTGTGTATTTTAGTGAAATATAGGTTTGT
AGTGAAATAGTTACTATTTCATGAAAGTAGATATTTTTAGAATTTTTGAAATACCACAGT
TGTTTTCCTGGATTATGAGGAAAGGCACATTACATTTAGTCTTCCTTTCAATAAAACTCT
TTGAAGAAATAAGATTTTTAGAAATCAACTGCCCATTATAGCACAAAAATCAGCCAAAGC
AGAATTTAAAAGAATTGGCTTTTTAAGGTTCTTTTATTTTCCTTCTCCCATTTCAATCTT
ATCTTGAGGGAACAGCAGTCTTGCGAAAGAACTTTGTCGTGTCTGATCTGTGGTGTGTTC
CATGCCTACACACACTGGTGACTCCAGGAACTATTTCCACCTATTACCAGCGTTCCCTTG
GAACTCCTCTTAATGGTTCCAAATGCAGAGGAAAGTTTGCTTTCCTTCATGAGGCTTTTT
GTTTTGGGGGGTTTTTTGGTCCAAAAATATTTTCAGCAAAACTTTCCAACTCAGTGGAGT
TTTATTAAGAATTTCTTTGAAAATGATGGAGTTCATTGGCGCATAGGTACATTGGAAAAT
GTATCTATCTTCTTCCCAGCTGTACTGTAGTGCCCTGCAGGCTTGTTTATATGTTCACAG
TTACTTTTTTTTTTTTTTTAATAAAAGTCATTTACTGTAGAATACTTTTAATTTCACTTT
CTGTATTTTAATTTTGTTGAAGGGCTGATTGGGATTTCCATGTTCTTATTAAAAATCTAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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bla (0.248694) |
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spc (0.226732) |
|
tes (0.207814) |
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fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
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duo (0.172801) |
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csp (0.161186) |
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fco (0.157208) |
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cag (0.151194) |
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fat (0.147427) |
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hlv (0.139256) |
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ova (0.129132) |
|
ret (0.128733) |
|
nbm (0.0993246) |
|
bla (0.248694) |
|
spc (0.226732) |
|
tes (0.207814) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
csp (0.161186) |
|
fco (0.157208) |
|
cag (0.151194) |
|
fat (0.147427) |
|
hlv (0.139256) |
|
ova (0.129132) |
|
ret (0.128733) |
|
nbm (0.0993246) |