Ss1.1-rtes06_b1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTGCGCGACGCCGAGGCCGAGGTGCTCTTCTCCTTCAGTCTGGAAGAGTCCTTGAGG AGGGCGCACCTGGCTCCGCTCTTCAAGGCGAAATATTTTTACATCACTCCTGGAATTTGC CCGAGCCTCTCGACCATGAAAGCGATTGTGGAGTGCGCAGGGGGGAAAGTGCTGTCCAAA CAGCCGTCTTTCCGGAAACTCATGGAACACAAGCAAAACAAGAGTTTGTCAGAAATAATT TTGATATCCTGTGAGAATGACCTCCACTTGTGTCGAGAGTATTTTGCCCGAGGAATAGAT GTTCACAATGCAGAGTTTGTTCTAACTGGAGTGCTCACACAGACGCTGGACTATGAATCA TATAAATTTCACTGAGGCACCTGCACAGGTGACCGGAGCCCAGCCCGTGGTCTGGAGGCG TCGGCGGCCGCTGCTCCCTTCAGACGTCCTTGTTTTCCAGCTGCTTTCTTCTGGGACGAG CATTTTAAAGCAGGAAGACAAATAGTAAATATGCTGCATCTCATTGAGATGTGTAATTTT ATTCCGAGAAAAACATAAATTATGTTTTGTATTATAGGATTTTAAAAGCCCACATTAGGT TTTATGATTCCCTTGTCAGGTTTTTAAATGTTTTCACAACACTGTTAACGGAATTTCAGC TGCGAATAAGATGGTGTACATAGAGATCTTGCTCTCTCTAAATTATGGATGTTAAAGATT TGAGATGTTTTGTACTTTTATTTTTATTTCTTATACTTGTTTCTTTTATATTGATATCTT GCCCAGTTTTGAAAAATAAATGTACTTTTGAACTTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTGCGCGACGCCGAGGCCGAGGTGCTCTTCTCCTTCAGTCTGGAAGAGTCCTTGAGG AGGGCGCACCTGGCTCCGCTCTTCAAGGCGAAATATTTTTACATCACTCCTGGAATTTGC CCGAGCCTCTCGACCATGAAAGCGATTGTGGAGTGCGCAGGGGGGAAAGTGCTGTCCAAA CAGCCGTCTTTCCGGAAACTCATGGAACACAAGCAAAACAAGAGTTTGTCAGAAATAATT TTGATATCCTGTGAGAATGACCTCCACTTGTGTCGAGAGTATTTTGCCCGAGGAATAGAT GTTCACAATGCAGAGTTTGTTCTAACTGGAGTGCTCACACAGACGCTGGACTATGAATCA TATAAATTTCACTGAGGCACCTGCACAGGTGACCGGAGCCCAGCCCGTGGTCTGGAGGCG TCGGCGGCCGCTGCTCCCTTCAGACGTCCTTGTTTTCCAGCTGCTTTCTTCTGGGACGAG CATTTTAAAGCAGGAAGACAAATAGTAAATATGCTGCATCTCATTGAGATGTGTAATTTT ATTCCGAGAAAAACATAAATTATGTTTTGTATTATAGGATTTTAAAAGCCCACATTAGGT TTTATGATTCCCTTGTCAGGTTTTTAAATGTTTTCACAACACTGTTAACGGAATTTCAGC TGCGAATAAGATGGTGTACATAGAGATCTTGCTCTCTCTAAATTATGGATGTTAAAGATT TGAGATGTTTTGTACTTTTATTTTTATTTCTTATACTTGTTTCTTTTATATTGATATCTT GCCCAGTTTTGAAAAATAAATGTACTTTTGAACTTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 86-222, gnl|bosTau2|chr4 (68166998-68167134) | |
| 86-222, gnl|canFam2|chr16 (21020590-21020736) | |
| 86-222, gnl|danRer3|chr2 (21629136-21629274) | |
| 86-222, gnl|dasNov1|scaffold_244135 (626-772) | |
| 86-222, gnl|echTel1|scaffold_155763 (1358-1212) | |
| 86-222, gnl|fr1|chrUn (243033837-243033694) | |
| 86-222, gnl|galGal2|chr2 (7110554-7110700) | |
| 86-222, gnl|hg17|chr7 (154176032-154176178) | |
| 86-222, gnl|Hg17|chr7 (154176173-154176037) | |
| 86-222, gnl|loxAfr1|scaffold_9393 (50410-50556) | |
| 86-222, gnl|mm7|chr5 (26776872-26777017) | |
| 86-222, gnl|Mm7|chr5 (26777012-26776876) | |
| 86-222, gnl|monDom2|scaffold_7 (16349953-16350099) | |
| 86-222, gnl|oryCun1|scaffold_195711 (84641-84787) | |
| 86-222, gnl|panTro1|chr6 (157022878-157023024) | |
| 86-222, gnl|rheMac2|chr3 (192048356-192048502) | |
| 86-222, gnl|rn3|chr4 (2836320-2836175) | |
| 86-222, gnl|tetNig1|chrUn_random (90264404-90264546) | |
| 86-222, gnl|xenTro1|scaffold_57 (1780800-1780946) | |
| 414-817, gnl|bosTau2|chr4 (68167927-68168334) | |
| 414-817, gnl|Hg17|chr7 (154173444-154173052) | |
| 414-817, gnl|Mm7|chr5 (26774923-26774508) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-222, gnl|bosTau2|chr4 (68166998-68167134) | |
| 86-222, gnl|canFam2|chr16 (21020590-21020736) | |
| 86-222, gnl|danRer3|chr2 (21629136-21629274) | |
| 86-222, gnl|dasNov1|scaffold_244135 (626-772) | |
| 86-222, gnl|echTel1|scaffold_155763 (1358-1212) | |
| 86-222, gnl|fr1|chrUn (243033837-243033694) | |
| 86-222, gnl|galGal2|chr2 (7110554-7110700) | |
| 86-222, gnl|hg17|chr7 (154176032-154176178) | |
| 86-222, gnl|Hg17|chr7 (154176173-154176037) | |
| 86-222, gnl|loxAfr1|scaffold_9393 (50410-50556) | |
| 86-222, gnl|mm7|chr5 (26776872-26777017) | |
| 86-222, gnl|Mm7|chr5 (26777012-26776876) | |
| 86-222, gnl|monDom2|scaffold_7 (16349953-16350099) | |
| 86-222, gnl|oryCun1|scaffold_195711 (84641-84787) | |
| 86-222, gnl|panTro1|chr6 (157022878-157023024) | |
| 86-222, gnl|rheMac2|chr3 (192048356-192048502) | |
| 86-222, gnl|rn3|chr4 (2836320-2836175) | |
| 86-222, gnl|tetNig1|chrUn_random (90264404-90264546) | |
| 86-222, gnl|xenTro1|scaffold_57 (1780800-1780946) | |
| 414-817, gnl|bosTau2|chr4 (68167927-68168334) | |
| 414-817, gnl|Hg17|chr7 (154173444-154173052) | |
| 414-817, gnl|Mm7|chr5 (26774923-26774508) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| thg (0.507164) | |
| tes (0.415628) | |
| ski (0.29347) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| che (0.136314) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.507164) | |
| tes (0.415628) | |
| ski (0.29347) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| che (0.136314) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) |