Ss1.1-rtes06_d15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGTTGACCGTGTTTTTGATGAAAGCCTCAACTTCCGAAAGATCCCTCCATTAGTTCATT CTAAAACACCCGAAGGAAACAACTGTCGGTCTAGCGATCCAAGACCTCAACCAACAGAGC CTCCTGATCACTTAACAATTACAAGGCGGAGAACCTGGAGCAGGGATGAAGTCATGGGAG ATAATCTGCTGCTGTCATCTGTCTTTCAGTTCTCTAGGAAGATAAGACAGTCTATAGATA AAACAGCCGGGAAGATCAGAATATTATTTAAAGACAAAGATCGGAATTGGGATGAAATAG AAAGCAAGTTAAGAGCCGAAAGTGAAGTCCCTATTGTGAAAACCTCAAGTATGGAGATCT CTTCAATCTTACAGGAACTAAAAAGAGTTGAAAAGCAGCTACAAGCGATCAATGCTATGA TTGACCCGGATGGAACTTTGGAGGCTCTGAACAACATGGGATTTCCCAGTGCAATCTTGC CGTCTCCACCAAAACAGAAGTCCAGTCCTGTGAATAACCACAGCAGCCCGGGTCAGACAC CGACACTTTGCCAACCAGAAGCTAGGGTTCTTCAGCCTGCTGCTCTTTCAGTCTCAGCTG AATTTGAGAATGCGGAATCTGAGGCTGATTTCAGTATACATTTCAATAGGTTCAACCCTG ATGGGGAAGAGGACGATGTTACAGTACATGAATGACTTTGTCTTGCTTGTTAAAAATTAT TACCTGTGGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGTTGACCGTGTTTTTGATGAAAGCCTCAACTTCCGAAAGATCCCTCCATTAGTTCATT CTAAAACACCCGAAGGAAACAACTGTCGGTCTAGCGATCCAAGACCTCAACCAACAGAGC CTCCTGATCACTTAACAATTACAAGGCGGAGAACCTGGAGCAGGGATGAAGTCATGGGAG ATAATCTGCTGCTGTCATCTGTCTTTCAGTTCTCTAGGAAGATAAGACAGTCTATAGATA AAACAGCCGGGAAGATCAGAATATTATTTAAAGACAAAGATCGGAATTGGGATGAAATAG AAAGCAAGTTAAGAGCCGAAAGTGAAGTCCCTATTGTGAAAACCTCAAGTATGGAGATCT CTTCAATCTTACAGGAACTAAAAAGAGTTGAAAAGCAGCTACAAGCGATCAATGCTATGA TTGACCCGGATGGAACTTTGGAGGCTCTGAACAACATGGGATTTCCCAGTGCAATCTTGC CGTCTCCACCAAAACAGAAGTCCAGTCCTGTGAATAACCACAGCAGCCCGGGTCAGACAC CGACACTTTGCCAACCAGAAGCTAGGGTTCTTCAGCCTGCTGCTCTTTCAGTCTCAGCTG AATTTGAGAATGCGGAATCTGAGGCTGATTTCAGTATACATTTCAATAGGTTCAACCCTG ATGGGGAAGAGGACGATGTTACAGTACATGAATGACTTTGTCTTGCTTGTTAAAAATTAT TACCTGTGGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 524-631, - strand, RNAz p=0.953566 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 524-631, - strand, RNAz p=0.953566 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-172, gnl|bosTau2|chr16 (23578357-23578186) | |
| 1-172, gnl|canFam2|chr7 (37249298-37249515) | |
| 1-172, gnl|canFam2|chr7 (37249487-37249258) | |
| 1-172, gnl|danRer3|chr13 (6375386-6375194) | |
| 1-172, gnl|danRer3|chr13 (6568132-6568332) | |
| 1-172, gnl|dasNov1|scaffold_22968 (10680-10902) | |
| 1-172, gnl|dasNov1|scaffold_22968 (10869-10673) | |
| 1-172, gnl|echTel1|scaffold_306688 (31919-31696) | |
| 1-172, gnl|echTel1|scaffold_306688 (31730-31919) | |
| 1-172, gnl|fr1|chrUn (257212969-257212784) | |
| 1-172, gnl|fr1|chrUn (257212784-257212969) | |
| 1-172, gnl|galGal2|chr3 (31581320-31581094) | |
| 1-172, gnl|galGal2|chr3 (31581128-31581340) | |
| 1-172, gnl|hg17|chr1 (239629275-239629497) | |
| 1-172, gnl|Hg17|chr1 (239629449-239629278) | |
| 1-172, gnl|hg17|chr4 (119818965-119819194) | |
| 1-172, gnl|loxAfr1|scaffold_11171 (21246-21470) | |
| 1-172, gnl|loxAfr1|scaffold_11171 (21437-21246) | |
| 1-172, gnl|mm7|chr1 (176706197-176706424) | |
| 1-172, gnl|mm7|chr1 (176706386-176706162) | |
| 1-172, gnl|Mm7|chr1 (176706371-176706200) | |
| 1-172, gnl|monDom2|scaffold_13 (40771534-40771309) | |
| 1-172, gnl|monDom2|scaffold_13 (40771345-40771535) | |
| 1-172, gnl|oryCun1|scaffold_65951 (1608-1385) | |
| 1-172, gnl|oryCun1|scaffold_65951 (1419-1640) | |
| 1-172, gnl|panTro1|chr1 (223619815-223620037) | |
| 1-172, gnl|panTro1|chr1 (223620004-223619785) | |
| 1-172, gnl|rheMac2|chr1 (213967653-213967431) | |
| 1-172, gnl|rheMac2|chr1 (213967464-213967682) | |
| 1-172, gnl|rn3|chr13 (92700351-92700578) | |
| 1-172, gnl|rn3|chr13 (92700540-92700323) | |
| 1-172, gnl|tetNig1|chr17 (11058183-11058402) | |
| 1-172, gnl|tetNig1|chr17 (11058368-11058183) | |
| 1-172, gnl|xenTro1|scaffold_556 (569923-569719) | |
| 1-172, gnl|xenTro1|scaffold_556 (569737-569947) | |
| 404-732, gnl|bosTau2|chr16 (23568397-23568070) | |
| 404-732, gnl|Hg17|chr1 (239616083-239615754) | |
| 404-732, gnl|Mm7|chr1 (176702266-176701927) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-172, gnl|bosTau2|chr16 (23578357-23578186) | |
| 1-172, gnl|canFam2|chr7 (37249298-37249515) | |
| 1-172, gnl|canFam2|chr7 (37249487-37249258) | |
| 1-172, gnl|danRer3|chr13 (6375386-6375194) | |
| 1-172, gnl|danRer3|chr13 (6568132-6568332) | |
| 1-172, gnl|dasNov1|scaffold_22968 (10680-10902) | |
| 1-172, gnl|dasNov1|scaffold_22968 (10869-10673) | |
| 1-172, gnl|echTel1|scaffold_306688 (31919-31696) | |
| 1-172, gnl|echTel1|scaffold_306688 (31730-31919) | |
| 1-172, gnl|fr1|chrUn (257212969-257212784) | |
| 1-172, gnl|fr1|chrUn (257212784-257212969) | |
| 1-172, gnl|galGal2|chr3 (31581320-31581094) | |
| 1-172, gnl|galGal2|chr3 (31581128-31581340) | |
| 1-172, gnl|hg17|chr1 (239629275-239629497) | |
| 1-172, gnl|Hg17|chr1 (239629449-239629278) | |
| 1-172, gnl|hg17|chr4 (119818965-119819194) | |
| 1-172, gnl|loxAfr1|scaffold_11171 (21246-21470) | |
| 1-172, gnl|loxAfr1|scaffold_11171 (21437-21246) | |
| 1-172, gnl|mm7|chr1 (176706197-176706424) | |
| 1-172, gnl|mm7|chr1 (176706386-176706162) | |
| 1-172, gnl|Mm7|chr1 (176706371-176706200) | |
| 1-172, gnl|monDom2|scaffold_13 (40771534-40771309) | |
| 1-172, gnl|monDom2|scaffold_13 (40771345-40771535) | |
| 1-172, gnl|oryCun1|scaffold_65951 (1608-1385) | |
| 1-172, gnl|oryCun1|scaffold_65951 (1419-1640) | |
| 1-172, gnl|panTro1|chr1 (223619815-223620037) | |
| 1-172, gnl|panTro1|chr1 (223620004-223619785) | |
| 1-172, gnl|rheMac2|chr1 (213967653-213967431) | |
| 1-172, gnl|rheMac2|chr1 (213967464-213967682) | |
| 1-172, gnl|rn3|chr13 (92700351-92700578) | |
| 1-172, gnl|rn3|chr13 (92700540-92700323) | |
| 1-172, gnl|tetNig1|chr17 (11058183-11058402) | |
| 1-172, gnl|tetNig1|chr17 (11058368-11058183) | |
| 1-172, gnl|xenTro1|scaffold_556 (569923-569719) | |
| 1-172, gnl|xenTro1|scaffold_556 (569737-569947) | |
| 404-732, gnl|bosTau2|chr16 (23568397-23568070) | |
| 404-732, gnl|Hg17|chr1 (239616083-239615754) | |
| 404-732, gnl|Mm7|chr1 (176702266-176701927) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| cte (0.58548) |