Non-Coding RNA Search

Ss1.1-rtes07_c17.5

Sequence:


               
               ATCTACTCCAGAACTGACAGAGATAAGCCAAGAAAATGTACAAAAGTTTGACGTGTCACA
GTTTCCTAGTAATAGAGGAGACATTTCTAAAATCGTGCCCAGAACTGTCTACACCAACAG
CAAAGGTTCGACGGCCAATCACACTGGCACCAAAATACTACCTACCAACTGTTTGTCAAA
GACTCTGCCATTCGTCGCAAGGTTGAACTCCCCAATGGGCCCTGGCCGGACTATCGTCAT
AAAAGGAGAAGTAAATACAAATGCCAAGGGCTTTAATGTTGACCTGCTATCAGGAAAATC
CAAGGATATTGCTCTTCACTTGAACCCACGCTTGAATGTTAAAGCATTTGTAAGAAATTC
TTTTCTTCAGGAGTCCTGGGGAGAAGAAGAGAGAAATATTACCTGTTTCCCATTTAGTCC
TGGGATGTACTTTGAGATGATAATTTATTGTGATGTTAGAGAGTTCAAGGTTGCAATAAA
TGGTGTACATAGCCTGGAGTACAAACACAGATTCAGAGAGCTCAGTAATATTGACACGCT
GGAGATCGATGGCGACATCCACTTACTGGAAGTAAGAAACTGGTAGCTGGCACGACTGCT
GCTAAAACTGAAATACAGAATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTACTCCAGAACTGACAGAGATAAGCCAAGAAAATGTACAAAAGTTTGACGTGTCACA
GTTTCCTAGTAATAGAGGAGACATTTCTAAAATCGTGCCCAGAACTGTCTACACCAACAG
CAAAGGTTCGACGGCCAATCACACTGGCACCAAAATACTACCTACCAACTGTTTGTCAAA
GACTCTGCCATTCGTCGCAAGGTTGAACTCCCCAATGGGCCCTGGCCGGACTATCGTCAT
AAAAGGAGAAGTAAATACAAATGCCAAGGGCTTTAATGTTGACCTGCTATCAGGAAAATC
CAAGGATATTGCTCTTCACTTGAACCCACGCTTGAATGTTAAAGCATTTGTAAGAAATTC
TTTTCTTCAGGAGTCCTGGGGAGAAGAAGAGAGAAATATTACCTGTTTCCCATTTAGTCC
TGGGATGTACTTTGAGATGATAATTTATTGTGATGTTAGAGAGTTCAAGGTTGCAATAAA
TGGTGTACATAGCCTGGAGTACAAACACAGATTCAGAGAGCTCAGTAATATTGACACGCT
GGAGATCGATGGCGACATCCACTTACTGGAAGTAAGAAACTGGTAGCTGGCACGACTGCT
GCTAAAACTGAAATACAGAATGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57084941|ref|XP_536335.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57084941|ref|XP_536335.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-440, + strand, RNAz p=0.806073

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-440, + strand, RNAz p=0.806073

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               265-440, gnl|bosTau2|chr11 (62902785-62902960)
               

               
               265-440, gnl|Hg17|chr1 (233034085-233034260)
               

               
               265-440, gnl|Mm7|chr13 (12408570-12408396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-440, gnl|bosTau2|chr11 (62902785-62902960)
               

               
               265-440, gnl|Hg17|chr1 (233034085-233034260)
               

               
               265-440, gnl|Mm7|chr13 (12408570-12408396)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.623441)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)

	265-440, gnl\|bosTau2\|chr11 (62902785-62902960)
	265-440, gnl\|Hg17\|chr1 (233034085-233034260)
	265-440, gnl\|Mm7\|chr13 (12408570-12408396)