Non-Coding RNA Search

Ss1.1-rtes07_d7.5

Sequence:


               
               TAAAAATTTCATCCTCTTGAAAATCTTTGTTCAGATTCATGAGAAGTTTTGTATGACCAC
CTTTATCTTTTCTGCAAGGAAAATGTTCTTAAAGTTCTACCAAGGCCAGAAGCTGATCTT
CAAATTTACAAGCTAGTTGTAACTCTGACATACTTTCAGAATTACAAGGCTTCCGATTTC
TTGCATTTTGTTTTCAAGTCTGTGTGGTTTAGATATGACCAATTTAGAAATAACTCGGTA
AAATCTCTAGACTCTCCTGATCAGTGCAGAATTATTACCTGCCATTTGCTTTCTGTAAGA
ATTTCAAAAATCAGAGCAAATGTGTCTGTGAGCAGACTTGGCTCCTTTTAATATTTTTCT
CCTGGCCCACTCCCTGTGCCTGCCCTGAATCTGTGTGGTGCTACAGCAGCTCTGCCCTGC
ACACCATGCTAGGAAGCTTCCTTTTTGGCAGAATATGTTTGGCAGCAAAGCTATAGAAAC
AGGTGCATTTAGAACAGTCTGGGCACCAGTTATGAGTCTTACCGAGTCAAAAATCTGAGC
ACTTGCTGAGAACCAAACTGATTCCACTGGAAAAACCCTCTGTGGAGCTGCACACCTCTT
AGACTCTTCTTCCTAGATGAAGGTTTGCATTTCCCTCCTGTCACAGTAAAAGGCATTGAA
AGCCACCGACCCTCGCTGCTGTGTGGCAGGGAGAAGCAGCACCACCCCCAGCACTTATGG
TCCTGTAACTCGGTGCTGGAATTCTCTCAAGGCTGTTAGCATGGGTGTTCTTTTCCTAGT
GGATGGAGCAATAAACTGATGAAGCCAAGTAGAGAAGCTAGGCCGTGGAAGGAAAGATCC
ATTGAGGCTAGCAGAAGCCTCACGTGGGGCCAGAAGCCAGATCAGCAATGGAGGCACCTC
GGAGTTGACCAGAAGGATCTCCGTTGTTTTCACGAGGCTGTAAGTAGCGATGGTGGTGGC
GATGCGTGATCTGATCTGGCGTGGAGCTCTGTGGCAAAGCTGCTGTTTCTGAAAGTGAGA
AGCCATTCTCAGCTCAACCCAACGCTTAAGAGAAGTTTTGGCAAATCGTGTCAGCAGTTT
GGAAACATGTAGAAAAAGCTGCTGATTGAATCGGTTATGGGAACGGAGTTGAGTGGCGTT
TGTAACTTACTACACTCTCATTGCTCTTTATTGAGTATGGCGTTGTCTGACCTTACTCTG
ATTCCTTCTGCCGAAAAGTAACTCTCGTGCGTATGTTGAAGTGTTTTTCCAGCTATGAAT
TCTTTAGGATAGAGATTTATTTACCAAATGTGAAGTCTTTTGAGGAAGTATGAAGTTTTG
TAGAAATTAACTGTGAAATGTCAGAGAATAATAAAAGTCACTTACTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAATTTCATCCTCTTGAAAATCTTTGTTCAGATTCATGAGAAGTTTTGTATGACCAC
CTTTATCTTTTCTGCAAGGAAAATGTTCTTAAAGTTCTACCAAGGCCAGAAGCTGATCTT
CAAATTTACAAGCTAGTTGTAACTCTGACATACTTTCAGAATTACAAGGCTTCCGATTTC
TTGCATTTTGTTTTCAAGTCTGTGTGGTTTAGATATGACCAATTTAGAAATAACTCGGTA
AAATCTCTAGACTCTCCTGATCAGTGCAGAATTATTACCTGCCATTTGCTTTCTGTAAGA
ATTTCAAAAATCAGAGCAAATGTGTCTGTGAGCAGACTTGGCTCCTTTTAATATTTTTCT
CCTGGCCCACTCCCTGTGCCTGCCCTGAATCTGTGTGGTGCTACAGCAGCTCTGCCCTGC
ACACCATGCTAGGAAGCTTCCTTTTTGGCAGAATATGTTTGGCAGCAAAGCTATAGAAAC
AGGTGCATTTAGAACAGTCTGGGCACCAGTTATGAGTCTTACCGAGTCAAAAATCTGAGC
ACTTGCTGAGAACCAAACTGATTCCACTGGAAAAACCCTCTGTGGAGCTGCACACCTCTT
AGACTCTTCTTCCTAGATGAAGGTTTGCATTTCCCTCCTGTCACAGTAAAAGGCATTGAA
AGCCACCGACCCTCGCTGCTGTGTGGCAGGGAGAAGCAGCACCACCCCCAGCACTTATGG
TCCTGTAACTCGGTGCTGGAATTCTCTCAAGGCTGTTAGCATGGGTGTTCTTTTCCTAGT
GGATGGAGCAATAAACTGATGAAGCCAAGTAGAGAAGCTAGGCCGTGGAAGGAAAGATCC
ATTGAGGCTAGCAGAAGCCTCACGTGGGGCCAGAAGCCAGATCAGCAATGGAGGCACCTC
GGAGTTGACCAGAAGGATCTCCGTTGTTTTCACGAGGCTGTAAGTAGCGATGGTGGTGGC
GATGCGTGATCTGATCTGGCGTGGAGCTCTGTGGCAAAGCTGCTGTTTCTGAAAGTGAGA
AGCCATTCTCAGCTCAACCCAACGCTTAAGAGAAGTTTTGGCAAATCGTGTCAGCAGTTT
GGAAACATGTAGAAAAAGCTGCTGATTGAATCGGTTATGGGAACGGAGTTGAGTGGCGTT
TGTAACTTACTACACTCTCATTGCTCTTTATTGAGTATGGCGTTGTCTGACCTTACTCTG
ATTCCTTCTGCCGAAAAGTAACTCTCGTGCGTATGTTGAAGTGTTTTTCCAGCTATGAAT
TCTTTAGGATAGAGATTTATTTACCAAATGTGAAGTCTTTTGAGGAAGTATGAAGTTTTG
TAGAAATTAACTGTGAAATGTCAGAGAATAATAAAAGTCACTTACTTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               444-558, - strand, RNAz p=0.605216
               

               
               597-710, + strand, RNAz p=0.580741

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-558, - strand, RNAz p=0.605216
               

               
               597-710, + strand, RNAz p=0.580741

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033426, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033426, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-1372, gnl|bosTau2|chr10 (61829128-61830437)
               

               
               30-1372, gnl|Hg17|chr14 (76651723-76653380)
               

               
               30-1372, gnl|Mm7|chr12 (84966658-84967960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1372, gnl|bosTau2|chr10 (61829128-61830437)
               

               
               30-1372, gnl|Hg17|chr14 (76651723-76653380)
               

               
               30-1372, gnl|Mm7|chr12 (84966658-84967960)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               cbe (1.19617)
               

               
               cte (0.58548)
               

               
               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               cte (0.58548)
               

               
               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               gul (0.355177)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	444-558, - strand, RNAz p=0.605216
	597-710, + strand, RNAz p=0.580741

	30-1372, gnl\|bosTau2\|chr10 (61829128-61830437)
	30-1372, gnl\|Hg17\|chr14 (76651723-76653380)
	30-1372, gnl\|Mm7\|chr12 (84966658-84967960)

	cbe (1.19617)
	cte (0.58548)
	bfe (0.449573)
	ste (0.405625)
	gul (0.355177)
	cje (0.330469)
	fco (0.314416)
	sme (0.305437)
	ldo (0.291008)
	che (0.272628)
	fce (0.271592)
	ssp (0.271039)
	ova (0.258264)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	sto (0.179824)
	fty (0.17584)
	cut (0.169924)
	cki (0.165235)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	tra (0.123092)
	pgl (0.118483)
	spc (0.113366)