Non-Coding RNA Search

Ss1.1-rtes07_e13.5

Sequence:


               
               CACCAGATGTGATGAGTGATATTTTATTTGCACATCAATGTTTTTATTTTTATATTCTGG
CTCAGCTGCTTCTCCGAGGGGAGTGAAGGAATGAGCCACAAAGGATGTTTGTAGTAGCTA
TATTGGCAATGCATTTTATATTTTTCAGTATTTAATTTTGAAAATCTTAAAGGATTGTGC
ATCTTGAGAGAAAGTTTGAGCAAATTTTAATCTAGTGGAATGTTCATTTATGCTGCTTCC
TGTGCACGACAGCAGCTGTAGTATCTCTTTTGGAAGTAAACATCCCATATTTTGATGTCT
ATGAATGTAGGTTTCCTTTTCTACCCTTCCTCCTCCCCTCTCTTTTTTCTTTCATTCCTT
CTTTCCCTTCTCTTTCTTTACGTTTTTGGAAATCACCTAATTGTATATAAGTTGTAATCC
AGACCTCATATATCAATGGGGAACCTTCAAATATAAATATTACCAATACATTTTCTGGTT
GTTGTCTGATTTTTGATTGAGGTGTAATGAGAATGACATGTCCATTGCTTTCGGTTTGAG
GATTTTGCTTCAGCTTCATAAATCTTTTGGTATTTTAGTATTTCATTGTTTTAGCAGAAG
AGGGCAGCAAAAGTTCATTTTCCCTGTTAGAAATGCTGTAGTTCATGATTGGTTTTAAAT
TTAGTTGCGTGTGTGAGTGTGTGTATATGTGTGGTTTAAACAGCATCTGTTTGTGGGTAG
AGGTAAAAATGAAACATTTTTTGATATGAAAAGTTGCATATGAAAATTATAGACTGGTTC
AACCAGACAGTGAAGATTTCCAATCCACATCAAAGTTAAAATGCCACAAAACAATCTTCC
AGTGCTGGCTAAAACATGCTACTTCCTTTTCAAACACAACAAAAATGAAAGCTGAGTCTT
AAATACTTGGGATTTAAAATGTCTTTCTTTGAAAATGATTTAGCTTCTTCAAAGTGGTAA
CAGAAACAAAAATGAAGGTGCTCCCAAAGGGAAATGTAACCTTCTGCTTTCACAGATGTT
GAGAGATTGTGTACTGTGGGTACATCCTAATAAAGAAGCAGTGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGATGTGATGAGTGATATTTTATTTGCACATCAATGTTTTTATTTTTATATTCTGG
CTCAGCTGCTTCTCCGAGGGGAGTGAAGGAATGAGCCACAAAGGATGTTTGTAGTAGCTA
TATTGGCAATGCATTTTATATTTTTCAGTATTTAATTTTGAAAATCTTAAAGGATTGTGC
ATCTTGAGAGAAAGTTTGAGCAAATTTTAATCTAGTGGAATGTTCATTTATGCTGCTTCC
TGTGCACGACAGCAGCTGTAGTATCTCTTTTGGAAGTAAACATCCCATATTTTGATGTCT
ATGAATGTAGGTTTCCTTTTCTACCCTTCCTCCTCCCCTCTCTTTTTTCTTTCATTCCTT
CTTTCCCTTCTCTTTCTTTACGTTTTTGGAAATCACCTAATTGTATATAAGTTGTAATCC
AGACCTCATATATCAATGGGGAACCTTCAAATATAAATATTACCAATACATTTTCTGGTT
GTTGTCTGATTTTTGATTGAGGTGTAATGAGAATGACATGTCCATTGCTTTCGGTTTGAG
GATTTTGCTTCAGCTTCATAAATCTTTTGGTATTTTAGTATTTCATTGTTTTAGCAGAAG
AGGGCAGCAAAAGTTCATTTTCCCTGTTAGAAATGCTGTAGTTCATGATTGGTTTTAAAT
TTAGTTGCGTGTGTGAGTGTGTGTATATGTGTGGTTTAAACAGCATCTGTTTGTGGGTAG
AGGTAAAAATGAAACATTTTTTGATATGAAAAGTTGCATATGAAAATTATAGACTGGTTC
AACCAGACAGTGAAGATTTCCAATCCACATCAAAGTTAAAATGCCACAAAACAATCTTCC
AGTGCTGGCTAAAACATGCTACTTCCTTTTCAAACACAACAAAAATGAAAGCTGAGTCTT
AAATACTTGGGATTTAAAATGTCTTTCTTTGAAAATGATTTAGCTTCTTCAAAGTGGTAA
CAGAAACAAAAATGAAGGTGCTCCCAAAGGGAAATGTAACCTTCTGCTTTCACAGATGTT
GAGAGATTGTGTACTGTGGGTACATCCTAATAAAGAAGCAGTGAAGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               343-441, - strand, RNAz p=0.8765
               

               
               761-879, - strand, RNAz p=0.813656

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-441, - strand, RNAz p=0.8765
               

               
               761-879, - strand, RNAz p=0.813656

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1068, gnl|bosTau2|chr10 (49189797-49188753)
               

               
               1-1068, gnl|Hg17|chr14 (62908922-62907837)
               

               
               1-1068, gnl|Mm7|chr12 (73408939-73407922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr10 (49189797-49188753)
               

               
               1-1068, gnl|Hg17|chr14 (62908922-62907837)
               

               
               1-1068, gnl|Mm7|chr12 (73408939-73407922)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lin (0.291206)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	343-441, - strand, RNAz p=0.8765
	761-879, - strand, RNAz p=0.813656

	1-1068, gnl\|bosTau2\|chr10 (49189797-49188753)
	1-1068, gnl\|Hg17\|chr14 (62908922-62907837)
	1-1068, gnl\|Mm7\|chr12 (73408939-73407922)

	lin (0.291206)
	tes (0.207814)
	hea (0.204499)
	fty (0.17584)
	hyp (0.142837)
	tra (0.123092)
	pgl (0.118483)