Non-Coding RNA Search

Ss1.1-rtes07_k12.5

Sequence:


               
               TTACAACAGATAAACAAGCCAGTTTTTCTCCTAAATTGAGAGATGAGTCAGCTATTGAGC
AAGATATTTCAGAAAGTTTGTCTAGATCAAAATATGCTGAAAAGCAAGAGCAGAAGTGGA
AAACTACTGAACCTTCTCAACAGACAGAGATGGCGCCCACAAGACACATCTACCAAGAAC
ATCTGACAGGAATAAAATCTGAGACAAGTCTGTCTAAGTCGCCATCAACTTCTCAGAAAA
ACCCTTCCTCAAGTTCTTGCATATTTCAAAAGATAGCCCAAGGGAAACAGATGTGTCAGA
AGTTAAAAGAACAGACTGATCAACTGAAGACCAAAAAAACTGGAAGGTGAAATCTTCAAG
TTGGAGATGCTACTTGAAGATTTTAAAGAGAAGATTAATAAAGGCGAATATACTTCCTCT
GTCTCTCTTCCTGCGAGTCTGCCAATCAACCGGGATGACCTGCCAGACTCATCATCTCTA
CCCTCAAATGAGGAGGACCTCGACCGCGCCTCGGGAAGGCAGGACCGCGTAGGGACCCTC
AGCGCAAGCTGTGCCTTCTGCCACCAGGTCCTGGAATGGAAGCAAAACATGGAGAAAAAA
GGCTGCAGAGGCATCAGCTGTGGAAGGTTTCCCATTGCTATGCAAGACAAGGCACTGCAC
CCAGACTCTGTTCTCGGTTCTGATACAGGGCACAGCTGCTATTCTGCTTCTGGGGCTGGA
GTGCCGAGTAATCAATGTGAGAAGTGTGGCACCAAGATTCATAACTCCCGGAGGATCCGT
GGGAAAGACCCAGCTAAGGTTTTCATCTTTTCTCTTTAGAATTTCATTATAGATACGACA
CCCCAAGACAGAACTACTTTAATCATAGGGAAAGAAGGTCCTTTGCCCAACTCCGCTTTT
TACATGAAAATAGAAACTCTTCACCTTAACTGTCTCAGTAACATAATTTAGTTCTGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAACAGATAAACAAGCCAGTTTTTCTCCTAAATTGAGAGATGAGTCAGCTATTGAGC
AAGATATTTCAGAAAGTTTGTCTAGATCAAAATATGCTGAAAAGCAAGAGCAGAAGTGGA
AAACTACTGAACCTTCTCAACAGACAGAGATGGCGCCCACAAGACACATCTACCAAGAAC
ATCTGACAGGAATAAAATCTGAGACAAGTCTGTCTAAGTCGCCATCAACTTCTCAGAAAA
ACCCTTCCTCAAGTTCTTGCATATTTCAAAAGATAGCCCAAGGGAAACAGATGTGTCAGA
AGTTAAAAGAACAGACTGATCAACTGAAGACCAAAAAAACTGGAAGGTGAAATCTTCAAG
TTGGAGATGCTACTTGAAGATTTTAAAGAGAAGATTAATAAAGGCGAATATACTTCCTCT
GTCTCTCTTCCTGCGAGTCTGCCAATCAACCGGGATGACCTGCCAGACTCATCATCTCTA
CCCTCAAATGAGGAGGACCTCGACCGCGCCTCGGGAAGGCAGGACCGCGTAGGGACCCTC
AGCGCAAGCTGTGCCTTCTGCCACCAGGTCCTGGAATGGAAGCAAAACATGGAGAAAAAA
GGCTGCAGAGGCATCAGCTGTGGAAGGTTTCCCATTGCTATGCAAGACAAGGCACTGCAC
CCAGACTCTGTTCTCGGTTCTGATACAGGGCACAGCTGCTATTCTGCTTCTGGGGCTGGA
GTGCCGAGTAATCAATGTGAGAAGTGTGGCACCAAGATTCATAACTCCCGGAGGATCCGT
GGGAAAGACCCAGCTAAGGTTTTCATCTTTTCTCTTTAGAATTTCATTATAGATACGACA
CCCCAAGACAGAACTACTTTAATCATAGGGAAAGAAGGTCCTTTGCCCAACTCCGCTTTT
TACATGAAAATAGAAACTCTTCACCTTAACTGTCTCAGTAACATAATTTAGTTCTGACTC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-152, gnl|bosTau2|chr3 (31506825-31506976)
               

               
               1-152, gnl|canFam2|chr6 (45965731-45965557)
               

               
               1-152, gnl|echTel1|scaffold_222870 (4002-3822)
               

               
               1-152, gnl|hg17|chr1 (109106330-109106510)
               

               
               1-152, gnl|Hg17|chr1 (109106490-109106333)
               

               
               1-152, gnl|loxAfr1|scaffold_48865 (4096-4270)
               

               
               1-152, gnl|mm7|chr3 (108570945-108570777)
               

               
               1-152, gnl|Mm7|chr3 (108570786-108570940)
               

               
               1-152, gnl|monDom2|scaffold_0 (7873507-7873330)
               

               
               1-152, gnl|oryCun1|scaffold_178748 (9036-8856)
               

               
               1-152, gnl|panTro1|chr1 (108034089-108034269)
               

               
               1-152, gnl|rheMac2|chr1 (111866442-111866619)
               

               
               1-152, gnl|rn3|chr2 (204313858-204313681)
               

               
               1-152, gnl|xenTro1|scaffold_388 (149008-148819)
               


               
               186-335, gnl|bosTau2|chr3 (31509152-31509304)
               

               
               186-335, gnl|Hg17|chr1 (109103728-109103576)
               

               
               186-335, gnl|Mm7|chr3 (108575025-108575174)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr3 (31506825-31506976)
               

               
               1-152, gnl|canFam2|chr6 (45965731-45965557)
               

               
               1-152, gnl|echTel1|scaffold_222870 (4002-3822)
               

               
               1-152, gnl|hg17|chr1 (109106330-109106510)
               

               
               1-152, gnl|Hg17|chr1 (109106490-109106333)
               

               
               1-152, gnl|loxAfr1|scaffold_48865 (4096-4270)
               

               
               1-152, gnl|mm7|chr3 (108570945-108570777)
               

               
               1-152, gnl|Mm7|chr3 (108570786-108570940)
               

               
               1-152, gnl|monDom2|scaffold_0 (7873507-7873330)
               

               
               1-152, gnl|oryCun1|scaffold_178748 (9036-8856)
               

               
               1-152, gnl|panTro1|chr1 (108034089-108034269)
               

               
               1-152, gnl|rheMac2|chr1 (111866442-111866619)
               

               
               1-152, gnl|rn3|chr2 (204313858-204313681)
               

               
               1-152, gnl|xenTro1|scaffold_388 (149008-148819)
               


               
               186-335, gnl|bosTau2|chr3 (31509152-31509304)
               

               
               186-335, gnl|Hg17|chr1 (109103728-109103576)
               

               
               186-335, gnl|Mm7|chr3 (108575025-108575174)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.415628)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-152, gnl\|bosTau2\|chr3 (31506825-31506976)
	1-152, gnl\|canFam2\|chr6 (45965731-45965557)
	1-152, gnl\|echTel1\|scaffold_222870 (4002-3822)
	1-152, gnl\|hg17\|chr1 (109106330-109106510)
	1-152, gnl\|Hg17\|chr1 (109106490-109106333)
	1-152, gnl\|loxAfr1\|scaffold_48865 (4096-4270)
	1-152, gnl\|mm7\|chr3 (108570945-108570777)
	1-152, gnl\|Mm7\|chr3 (108570786-108570940)
	1-152, gnl\|monDom2\|scaffold_0 (7873507-7873330)
	1-152, gnl\|oryCun1\|scaffold_178748 (9036-8856)
	1-152, gnl\|panTro1\|chr1 (108034089-108034269)
	1-152, gnl\|rheMac2\|chr1 (111866442-111866619)
	1-152, gnl\|rn3\|chr2 (204313858-204313681)
	1-152, gnl\|xenTro1\|scaffold_388 (149008-148819)

	186-335, gnl\|bosTau2\|chr3 (31509152-31509304)
	186-335, gnl\|Hg17\|chr1 (109103728-109103576)
	186-335, gnl\|Mm7\|chr3 (108575025-108575174)