Non-Coding RNA Search

Ss1.1-rtes07_p5.5

Sequence:


               
               GTTTTACAGGTAGCGAGACAGAGGTCCAGAAAGGGGAAGGTATTTCCCCAGAACCACGAG
GGTGACTTTAGTTTTAAGCGCCAACCTGAAGATGCCTTTGAATATGCATCCTTTTGTATG
TTACCTACACAGTTCGTGTGGTATTATTTTTCACGCTCCAGTTATTTTTGTGATAACTTT
CAACTGGTACAAGTGAACTCTTTATCATGTTGCTTCTAGAGGTCCGACATACCTAGAACG
TGTCAAGGATTTATCTGCTGTAAATAACCTCTTAATCAGAAAGGGGAAGAGCGCAGGGTG
GTTGTGAGACTCAAAAGGCATGCATCAAAAAGAGCATTTGTAAACTCCAAAGCCACGGAG
GGTTATATGACGGTCAGTGTTATCTTTATGATGGATCGGCTCTCACCCAGAAACCTGGGA
TATGTCTACCTATTGGGAATCTTAATAAGAAGGTACTTTTTCTGAGGATACGTGATGAAC
CAGATATTGAGGCTATAACAAATGCACACGACAGACATGGTCTTGTCCTCTAAAAGGCAG
TGTGGACATGTGAACAGGCTCTCAGAATGCCTAGTGTGAAGTGCAGCAGTCTGCTCATTC
CTTGCACACCTTTATCCCCAGCCGGTGCCCAGTTCAAGCTTAAAGTGGGGTTACCACCTA
ACTGGTGAACTACTGAGTGGCCATCAAAAGTCTGAGCTTCTTCAGGGCTCAGCTTAGCAG
AAAGAAGGAAGCAATGACTATTGAGACAATTGATAGGTCTGCTACACTAGAAATCCAACA
CATATGGTAAACACTCTATGCTTTCCAGAAAGGAGGAAGTGGAGCTATAAATCTTTGGCA
CCAGGAAGAAGACAGGTGGGAATCTAAGATCTTCCAGCAGATTTAAAGGAAGCAGTGTCT
TGATAACAGTATGCATATGGTGTCATTGTGTGTTGCTGAGGTATTTATTTAAATGCTTGT
AATGTGGTGAAACAGGCATATTGAAGGGAATTCTGCTCTTCTAGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTACAGGTAGCGAGACAGAGGTCCAGAAAGGGGAAGGTATTTCCCCAGAACCACGAG
GGTGACTTTAGTTTTAAGCGCCAACCTGAAGATGCCTTTGAATATGCATCCTTTTGTATG
TTACCTACACAGTTCGTGTGGTATTATTTTTCACGCTCCAGTTATTTTTGTGATAACTTT
CAACTGGTACAAGTGAACTCTTTATCATGTTGCTTCTAGAGGTCCGACATACCTAGAACG
TGTCAAGGATTTATCTGCTGTAAATAACCTCTTAATCAGAAAGGGGAAGAGCGCAGGGTG
GTTGTGAGACTCAAAAGGCATGCATCAAAAAGAGCATTTGTAAACTCCAAAGCCACGGAG
GGTTATATGACGGTCAGTGTTATCTTTATGATGGATCGGCTCTCACCCAGAAACCTGGGA
TATGTCTACCTATTGGGAATCTTAATAAGAAGGTACTTTTTCTGAGGATACGTGATGAAC
CAGATATTGAGGCTATAACAAATGCACACGACAGACATGGTCTTGTCCTCTAAAAGGCAG
TGTGGACATGTGAACAGGCTCTCAGAATGCCTAGTGTGAAGTGCAGCAGTCTGCTCATTC
CTTGCACACCTTTATCCCCAGCCGGTGCCCAGTTCAAGCTTAAAGTGGGGTTACCACCTA
ACTGGTGAACTACTGAGTGGCCATCAAAAGTCTGAGCTTCTTCAGGGCTCAGCTTAGCAG
AAAGAAGGAAGCAATGACTATTGAGACAATTGATAGGTCTGCTACACTAGAAATCCAACA
CATATGGTAAACACTCTATGCTTTCCAGAAAGGAGGAAGTGGAGCTATAAATCTTTGGCA
CCAGGAAGAAGACAGGTGGGAATCTAAGATCTTCCAGCAGATTTAAAGGAAGCAGTGTCT
TGATAACAGTATGCATATGGTGTCATTGTGTGTTGCTGAGGTATTTATTTAAATGCTTGT
AATGTGGTGAAACAGGCATATTGAAGGGAATTCTGCTCTTCTAGAATA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               4-294, gnl|bosTau2|chr29 (494776-494487)
               

               
               4-294, gnl|canFam2|chr21 (10075279-10075004)
               

               
               4-294, gnl|hg17|chr11 (93033648-93033919)
               

               
               4-294, gnl|Hg17|chr11 (93033909-93033658)
               

               
               4-294, gnl|panTro1|chr9 (94935163-94935433)
               

               
               4-294, gnl|rheMac2|chr14 (92220576-92220847)
               


               
               457-1008, gnl|bosTau2|chr29 (490465-489905)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-294, gnl|bosTau2|chr29 (494776-494487)
               

               
               4-294, gnl|canFam2|chr21 (10075279-10075004)
               

               
               4-294, gnl|hg17|chr11 (93033648-93033919)
               

               
               4-294, gnl|Hg17|chr11 (93033909-93033658)
               

               
               4-294, gnl|panTro1|chr9 (94935163-94935433)
               

               
               4-294, gnl|rheMac2|chr14 (92220576-92220847)
               


               
               457-1008, gnl|bosTau2|chr29 (490465-489905)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cte (0.29274)

	4-294, gnl\|bosTau2\|chr29 (494776-494487)
	4-294, gnl\|canFam2\|chr21 (10075279-10075004)
	4-294, gnl\|hg17\|chr11 (93033648-93033919)
	4-294, gnl\|Hg17\|chr11 (93033909-93033658)
	4-294, gnl\|panTro1\|chr9 (94935163-94935433)
	4-294, gnl\|rheMac2\|chr14 (92220576-92220847)

	457-1008, gnl\|bosTau2\|chr29 (490465-489905)