Ss1.1-rtes08_e7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGACTCCAGAGCTGAATATAAGTCAGATAAATGGGAGAAAGTTAACAAGACTTCCAG AAGAGCTGTGTAATATGATCCAACTTAAAGAACTTGATATCTCAAATAATGCAATCAGAG AGATGCCAAGAAGCATAGGGGAATTGAGAAGTTTGGTTAGTTTAAAAGCGTACAACAATC AAATAAGATATCTACCACCATCTTTTCTATCTTTAAATGCTCTCCAGCAGCTAAACTTGA GTGGAAATAATCTGACAGCTCTGCCTAGTGGTATCTACAACCTATTTTCACTGAAGGAGA TAAATTTTGATGATAACCCTTTGCTGAGACCTCCCATGGAAATCTGTAAAGGAAAGCAAT TGTATACTATTGCCCGCTACCTTCAGAGGGCAGATGAAAGAGATGAGAAAATCTTAGAGA AGATCTTCAAGATAGTTGCCACAAATATTACAGAAACAAATTTTGAATTTTTGTGTCAAA AATTAAACTTGACCATCTCAGAGACTGATAAGTCTACAATGAGCACTGTTTCATTAAGGG AGAAAGTTCACCAATTACTTGATCGGTGGAAAATGGAAAATAACTTATCAGTAACCGCTG CTGCTCTAAGAGACCAACTAACTCGGGCACTAACTATGATTGGAGCATATGAAATTATGG ACAAAATAACAGCTCTAAAACTTTTTACACGTGCAATTAAGTTCTGAATAGTGTCTCCAT AATATGTGCTTATGATGCACTTGTATAACTGAAACAGATGTAAAAGAATTGCATGCCATG TCTCTTTTCAAGGATTCCTAAGAGATAATGACAATTTATGGCTACCACACTAGTGCCATC CTAATAAAATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGACTCCAGAGCTGAATATAAGTCAGATAAATGGGAGAAAGTTAACAAGACTTCCAG AAGAGCTGTGTAATATGATCCAACTTAAAGAACTTGATATCTCAAATAATGCAATCAGAG AGATGCCAAGAAGCATAGGGGAATTGAGAAGTTTGGTTAGTTTAAAAGCGTACAACAATC AAATAAGATATCTACCACCATCTTTTCTATCTTTAAATGCTCTCCAGCAGCTAAACTTGA GTGGAAATAATCTGACAGCTCTGCCTAGTGGTATCTACAACCTATTTTCACTGAAGGAGA TAAATTTTGATGATAACCCTTTGCTGAGACCTCCCATGGAAATCTGTAAAGGAAAGCAAT TGTATACTATTGCCCGCTACCTTCAGAGGGCAGATGAAAGAGATGAGAAAATCTTAGAGA AGATCTTCAAGATAGTTGCCACAAATATTACAGAAACAAATTTTGAATTTTTGTGTCAAA AATTAAACTTGACCATCTCAGAGACTGATAAGTCTACAATGAGCACTGTTTCATTAAGGG AGAAAGTTCACCAATTACTTGATCGGTGGAAAATGGAAAATAACTTATCAGTAACCGCTG CTGCTCTAAGAGACCAACTAACTCGGGCACTAACTATGATTGGAGCATATGAAATTATGG ACAAAATAACAGCTCTAAAACTTTTTACACGTGCAATTAAGTTCTGAATAGTGTCTCCAT AATATGTGCTTATGATGCACTTGTATAACTGAAACAGATGTAAAAGAATTGCATGCCATG TCTCTTTTCAAGGATTCCTAAGAGATAATGACAATTTATGGCTACCACACTAGTGCCATC CTAATAAAATAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 43-161, + strand, RNAz p=0.707747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 43-161, + strand, RNAz p=0.707747 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 43-244, gnl|bosTau2|chr4 (954284-954083) | |
| 43-244, gnl|canFam2|chr14 (20750938-20751164) | |
| 43-244, gnl|dasNov1|scaffold_111083 (2417-2192) | |
| 43-244, gnl|echTel1|scaffold_315915 (192565-192791) | |
| 43-244, gnl|galGal2|chr2 (21816662-21816886) | |
| 43-244, gnl|hg17|chr7 (91432956-91433182) | |
| 43-244, gnl|Hg17|chr7 (91433170-91432969) | |
| 43-244, gnl|mm7|chr5 (3864852-3864623) | |
| 43-244, gnl|Mm7|chr5 (3864633-3864834) | |
| 43-244, gnl|monDom2|scaffold_7 (60143258-60143490) | |
| 43-244, gnl|oryCun1|scaffold_206745 (85999-86225) | |
| 43-244, gnl|panTro1|chr6 (92987992-92988218) | |
| 43-244, gnl|rheMac2|chr3 (125087139-125086913) | |
| 43-244, gnl|rn3|chr4 (26997818-26998045) | |
| 43-244, gnl|xenTro1|scaffold_182 (222213-221997) | |
| 522-686, gnl|bosTau2|chr4 (944939-944772) | |
| 522-686, gnl|canFam2|chr14 (20729661-20729829) | |
| 522-686, gnl|dasNov1|scaffold_46147 (10496-10664) | |
| 522-686, gnl|galGal2|chr2 (21813380-21813542) | |
| 522-686, gnl|hg17|chr7 (91418875-91419043) | |
| 522-686, gnl|Hg17|chr7 (91419041-91418874) | |
| 522-686, gnl|mm7|chr5 (3872532-3872367) | |
| 522-686, gnl|Mm7|chr5 (3872367-3872529) | |
| 522-686, gnl|monDom2|scaffold_7 (60125741-60125915) | |
| 522-686, gnl|panTro1|chr6 (92973787-92973955) | |
| 522-686, gnl|rheMac2|chr3 (125101903-125101735) | |
| 522-686, gnl|rn3|chr4 (26989008-26989173) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-244, gnl|bosTau2|chr4 (954284-954083) | |
| 43-244, gnl|canFam2|chr14 (20750938-20751164) | |
| 43-244, gnl|dasNov1|scaffold_111083 (2417-2192) | |
| 43-244, gnl|echTel1|scaffold_315915 (192565-192791) | |
| 43-244, gnl|galGal2|chr2 (21816662-21816886) | |
| 43-244, gnl|hg17|chr7 (91432956-91433182) | |
| 43-244, gnl|Hg17|chr7 (91433170-91432969) | |
| 43-244, gnl|mm7|chr5 (3864852-3864623) | |
| 43-244, gnl|Mm7|chr5 (3864633-3864834) | |
| 43-244, gnl|monDom2|scaffold_7 (60143258-60143490) | |
| 43-244, gnl|oryCun1|scaffold_206745 (85999-86225) | |
| 43-244, gnl|panTro1|chr6 (92987992-92988218) | |
| 43-244, gnl|rheMac2|chr3 (125087139-125086913) | |
| 43-244, gnl|rn3|chr4 (26997818-26998045) | |
| 43-244, gnl|xenTro1|scaffold_182 (222213-221997) | |
| 522-686, gnl|bosTau2|chr4 (944939-944772) | |
| 522-686, gnl|canFam2|chr14 (20729661-20729829) | |
| 522-686, gnl|dasNov1|scaffold_46147 (10496-10664) | |
| 522-686, gnl|galGal2|chr2 (21813380-21813542) | |
| 522-686, gnl|hg17|chr7 (91418875-91419043) | |
| 522-686, gnl|Hg17|chr7 (91419041-91418874) | |
| 522-686, gnl|mm7|chr5 (3872532-3872367) | |
| 522-686, gnl|Mm7|chr5 (3872367-3872529) | |
| 522-686, gnl|monDom2|scaffold_7 (60125741-60125915) | |
| 522-686, gnl|panTro1|chr6 (92973787-92973955) | |
| 522-686, gnl|rheMac2|chr3 (125101903-125101735) | |
| 522-686, gnl|rn3|chr4 (26989008-26989173) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) |