Non-Coding RNA Search

Ss1.1-rtes08_j19.5

Sequence:


               
               ATGCTTTCCAAGTTTTTATTTTAAAGAAAACTTCAAATTTTAGTAAAACATTACATATGA
AGCCAAGTTTATGACTGAGATCACCCTACTGTTTAAAATAACTCAAAAAATTTTCAAATG
CAAAGTGTTTGGAATTTTATGTACGTTAATGTGTTAGGACATCCTTTATTTAATCTCATC
TCAAACTGATTTGTGCTGTTTATATTTTTTTGTTTGTAGTGTGTAAGATTAAGCCAGAGC
CTTTTATTAAAATGACCCTAAATTGAATATTGGAGGAACAAAGTCCTTTTAAGTCACTAA
TGGACTATTTCACAATTACAAGCTAAAATATGTTCCTGATTTTAAGAAATCATACCTCAT
ACATTGATCTTTTAATTTATTACTAGTTTTTGAGAAATTAAATACTTGCCTAAGATAGAA
ATACATTTTTCTTTTAAGTTTAACATCTAGTTAACCGAACTTCAGAGTAAGATTTTGTTA
AATTGAGACCATTGTTCTAATATAATAATGGTTCACAAGCACTAAATTCTGAAGAGGAGA
AATTTTGTTATGAATTAAACAGGTTGGGTGATCTCAAATGTTTTCAGTTAATGCACGTAC
AATATTCATTTGCTTGGTTGTGCTACCTCTCAGGAGTAAAATTTAAGAAATTTATGAAGT
GAGAATTTTTTTGGTTTTAGAGTGGTTTGTTTTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTTTCCAAGTTTTTATTTTAAAGAAAACTTCAAATTTTAGTAAAACATTACATATGA
AGCCAAGTTTATGACTGAGATCACCCTACTGTTTAAAATAACTCAAAAAATTTTCAAATG
CAAAGTGTTTGGAATTTTATGTACGTTAATGTGTTAGGACATCCTTTATTTAATCTCATC
TCAAACTGATTTGTGCTGTTTATATTTTTTTGTTTGTAGTGTGTAAGATTAAGCCAGAGC
CTTTTATTAAAATGACCCTAAATTGAATATTGGAGGAACAAAGTCCTTTTAAGTCACTAA
TGGACTATTTCACAATTACAAGCTAAAATATGTTCCTGATTTTAAGAAATCATACCTCAT
ACATTGATCTTTTAATTTATTACTAGTTTTTGAGAAATTAAATACTTGCCTAAGATAGAA
ATACATTTTTCTTTTAAGTTTAACATCTAGTTAACCGAACTTCAGAGTAAGATTTTGTTA
AATTGAGACCATTGTTCTAATATAATAATGGTTCACAAGCACTAAATTCTGAAGAGGAGA
AATTTTGTTATGAATTAAACAGGTTGGGTGATCTCAAATGTTTTCAGTTAATGCACGTAC
AATATTCATTTGCTTGGTTGTGCTACCTCTCAGGAGTAAAATTTAAGAAATTTATGAAGT
GAGAATTTTTTTGGTTTTAGAGTGGTTTGTTTTGTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-354, gnl|bosTau2|chr16 (48623766-48624113)
               

               
               1-354, gnl|Hg17|chr1 (181820641-181820284)
               


               
               396-696, gnl|bosTau2|chr16 (48624121-48624420)
               

               
               396-696, gnl|Hg17|chr1 (181820239-181819936)
               

               
               396-696, gnl|Mm7|chr1 (151391581-151392051)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-354, gnl|bosTau2|chr16 (48623766-48624113)
               

               
               1-354, gnl|Hg17|chr1 (181820641-181820284)
               


               
               396-696, gnl|bosTau2|chr16 (48624121-48624420)
               

               
               396-696, gnl|Hg17|chr1 (181820239-181819936)
               

               
               396-696, gnl|Mm7|chr1 (151391581-151392051)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

	1-354, gnl\|bosTau2\|chr16 (48623766-48624113)
	1-354, gnl\|Hg17\|chr1 (181820641-181820284)

	396-696, gnl\|bosTau2\|chr16 (48624121-48624420)
	396-696, gnl\|Hg17\|chr1 (181820239-181819936)
	396-696, gnl\|Mm7\|chr1 (151391581-151392051)

	bfe (0.299715)
	tes (0.207814)
	fty (0.17584)
	fco (0.157208)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	ldo (0.0970026)