Non-Coding RNA Search

Ss1.1-rtes08_n3.5

Sequence:


               
               TGAATTAACATTTTAAAGATAGCATTAGAATCTATTCATGCGGGGCCAGGCACCTGGAAA
CACTGTCTGATTTGTTTTTCTAATCAGAATGAGATTAGATTGATTGTAAGTTTGCAGCTC
TTTAATTTAGGTAGTTTTAATTTATTTGTGAAAGTTAATCGATTTCTGGTATGTGGTTTT
AAAAGATAAAATGAATTTATATATATTAAACTATAAACCCCAAATCCACATGCATNGGAT
TTCTTGGTTTTCTTCTGGTTTCAGAATTAAAGCATGATTATTATATTTCATTTCAAATTC
AAATAAAATATCTTAAATGGTTCCATTATCAACATTATATTGTTGCCATTCAGTCAGTTT
TTTCATTACTGTAGCTGTGACTCAGTGTTTCTTTATAAAAATTTATTATTCTGAAAATTA
ACAACCTTAGAAGAATTTGGCTTTAATTTTATGTAATCATTTGTAAAATACTAATAACCA
AAAAGCATTCCCAGAATTTCAGCAGAGAATTTTTTAATTTCCTTAAACCACTTCCACTAC
CACTTGATTGTTCCTTAAATTTTCCATTTGGAATTATGAATTTAAAATTTCCCCAACTCA
TGGGAAAAAATTAACCCAGAAGTTCAAAAGTCTTTTAAACACTTATCTGACTCTAGCCTA
GAATATTTTCAAAAGCTCTGTCCTGGCCTGCAGGAGGAACCCTATACCAAGGGTGTTTGT
CACCTTCCCATTATGGTTTTGCGGCAACCCTTAAGTTAACAAGGTCTCCCCCAGAAACAA
CTGAGTGATCCGAAAAGTAATAATGAAAACTAAATATGCGATTTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATTAACATTTTAAAGATAGCATTAGAATCTATTCATGCGGGGCCAGGCACCTGGAAA
CACTGTCTGATTTGTTTTTCTAATCAGAATGAGATTAGATTGATTGTAAGTTTGCAGCTC
TTTAATTTAGGTAGTTTTAATTTATTTGTGAAAGTTAATCGATTTCTGGTATGTGGTTTT
AAAAGATAAAATGAATTTATATATATTAAACTATAAACCCCAAATCCACATGCATNGGAT
TTCTTGGTTTTCTTCTGGTTTCAGAATTAAAGCATGATTATTATATTTCATTTCAAATTC
AAATAAAATATCTTAAATGGTTCCATTATCAACATTATATTGTTGCCATTCAGTCAGTTT
TTTCATTACTGTAGCTGTGACTCAGTGTTTCTTTATAAAAATTTATTATTCTGAAAATTA
ACAACCTTAGAAGAATTTGGCTTTAATTTTATGTAATCATTTGTAAAATACTAATAACCA
AAAAGCATTCCCAGAATTTCAGCAGAGAATTTTTTAATTTCCTTAAACCACTTCCACTAC
CACTTGATTGTTCCTTAAATTTTCCATTTGGAATTATGAATTTAAAATTTCCCCAACTCA
TGGGAAAAAATTAACCCAGAAGTTCAAAAGTCTTTTAAACACTTATCTGACTCTAGCCTA
GAATATTTTCAAAAGCTCTGTCCTGGCCTGCAGGAGGAACCCTATACCAAGGGTGTTTGT
CACCTTCCCATTATGGTTTTGCGGCAACCCTTAAGTTAACAAGGTCTCCCCCAGAAACAA
CTGAGTGATCCGAAAAGTAATAATGAAAACTAAATATGCGATTTTAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               514-630, - strand, RNAz p=0.837566

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               514-630, - strand, RNAz p=0.837566

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               437-828, gnl|bosTau2|chr18 (35648600-35648210)
               

               
               437-828, gnl|Hg17|chr19 (37567860-37568234)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               437-828, gnl|bosTau2|chr18 (35648600-35648210)
               

               
               437-828, gnl|Hg17|chr19 (37567860-37568234)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pla (0.133672)

	437-828, gnl\|bosTau2\|chr18 (35648600-35648210)
	437-828, gnl\|Hg17\|chr19 (37567860-37568234)