Non-Coding RNA Search

Ss1.1-rtes09_d4.5

Sequence:


               
               GCGGCTCGAGCCGCCAACGCCGCCGTCGCGAGCGCAGGGCGAGCTGAGGGTTGAAGGGGA
GCGGTTTGCCTCCCTCGTCCAGGCCGAGTGGACGCGCCACCCTCTTGCCGTCTCCCTGTC
CGAACAGCACCTTCTTACTAAACCGATCGGAGGTCGGACCGGGAGGGCGGGGGACGGAGG
CGGGTCATGGGCTGAGGGGGAGGGTAGACGAGTGGCGGAAACCCTTAGACTCAGAGAAGC
ATCGAGAACCGGAAGGAGACCTTAGGAGGAAGAAGCCAAGGTAGCAAACATTTTTACTTA
CTCAAAGGGAATTCACAATATCCAGGAGGTCCATGAAGAAAAGTCCCAGAGAAGCTGATT
TGTACTCCCCTAATCTAAACAAGCTTCAGTATGAAAGTGTAATGGACCATGTTAATGCTC
TGAATTAACAGGGCACAGAGGACTGGGACAAATTTGAGGTCAGAGTTCTTAACGTTTTGT
GCCACAGACCACATTAGCAGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCCGCCAACGCCGCCGTCGCGAGCGCAGGGCGAGCTGAGGGTTGAAGGGGA
GCGGTTTGCCTCCCTCGTCCAGGCCGAGTGGACGCGCCACCCTCTTGCCGTCTCCCTGTC
CGAACAGCACCTTCTTACTAAACCGATCGGAGGTCGGACCGGGAGGGCGGGGGACGGAGG
CGGGTCATGGGCTGAGGGGGAGGGTAGACGAGTGGCGGAAACCCTTAGACTCAGAGAAGC
ATCGAGAACCGGAAGGAGACCTTAGGAGGAAGAAGCCAAGGTAGCAAACATTTTTACTTA
CTCAAAGGGAATTCACAATATCCAGGAGGTCCATGAAGAAAAGTCCCAGAGAAGCTGATT
TGTACTCCCCTAATCTAAACAAGCTTCAGTATGAAAGTGTAATGGACCATGTTAATGCTC
TGAATTAACAGGGCACAGAGGACTGGGACAAATTTGAGGTCAGAGTTCTTAACGTTTTGT
GCCACAGACCACATTAGCAGTCTG

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-272, gnl|bosTau2|chr6 (7015144-7014883)
               

               
               11-272, gnl|Hg17|chr4 (104106061-104106325)
               

               
               11-272, gnl|Mm7|chr3 (135233028-135232765)
               


               
               277-504, gnl|bosTau2|chr6 (7012822-7012594)
               

               
               277-504, gnl|Mm7|chr3 (135230739-135230521)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-272, gnl|bosTau2|chr6 (7015144-7014883)
               

               
               11-272, gnl|Hg17|chr4 (104106061-104106325)
               

               
               11-272, gnl|Mm7|chr3 (135233028-135232765)
               


               
               277-504, gnl|bosTau2|chr6 (7012822-7012594)
               

               
               277-504, gnl|Mm7|chr3 (135230739-135230521)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	11-272, gnl\|bosTau2\|chr6 (7015144-7014883)
	11-272, gnl\|Hg17\|chr4 (104106061-104106325)
	11-272, gnl\|Mm7\|chr3 (135233028-135232765)

	277-504, gnl\|bosTau2\|chr6 (7012822-7012594)
	277-504, gnl\|Mm7\|chr3 (135230739-135230521)