Ss1.1-rtes09_f18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTGAGGCCGGGAGGAAGAAGCAACGGCGTCGTCGTCGGCGGCTGGCCGGCGAGCCCC TGGCCTGCGGCCAGGCCTGCGACTCGGCCAGAGCTGCCCGGCAGAGGGATCAGGCCAGCA GGGCAAGAAGGCCGATATTGGTGAGAAAATGTCTGGCAGCAATGACTGGTTTCAGAGTTC CCGGGTCCCTAGCTTTGCTCAGATGCTGAAAAAGAACTTGCCAGTTCAGACATCAGCCCA GACAGTAACTACACCCACAGGATATTCCTCGGAAAGTTACAGCATGTCGAACATGGCATC CAAGGTTACACAAGTGACGGGTAATTTTCCAGAACCATTGCTTTCCAAAGGTCTTTCATC GATTTCAAATCCTGTCCTTCCTCCGAAAAAAATACCAAAGGAATTTATAATGAAATACAA ACGTGGAGAGATAAATCCTGTATCAGCCTTGCACCAGTTTGCACAGATGCAGCGGGTTCA GCTTGACCTTAAGGAAACAGTAACAACAGGTAATGTTATGGGACCATATTTTGCTTTTTG TGCTGTGGTTGATGGAATTCAATACAAGACTGGACTGGGACAAAATAAAAAGGAGTCTAG ATCCAATGCAGCAAAATTAGCTCTTGATGAGCTTCTACAGTTGGATGAACCTGAACCAAG AATTTCAGAAACATCAGGTCCTCCTCCTATCCCTGCAGAACCTATTGTTTCACCTGAACC AGTATATGTTTCAAAAGTACATTATGGTAGGAAAGTCCTTTATGATAATTTTTAAAGAAG ATTAACCCAATTAAAAATAACAGCATATAATTAAAATATGCATAGGTATGAAAATATACC TTAGTATTTCATTATTCAAACCTGTCACACTTCTACAGAAATGAGTGTTTCCTTCCATAT ATGCTAAAAATTAGAGAAATAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTGAGGCCGGGAGGAAGAAGCAACGGCGTCGTCGTCGGCGGCTGGCCGGCGAGCCCC TGGCCTGCGGCCAGGCCTGCGACTCGGCCAGAGCTGCCCGGCAGAGGGATCAGGCCAGCA GGGCAAGAAGGCCGATATTGGTGAGAAAATGTCTGGCAGCAATGACTGGTTTCAGAGTTC CCGGGTCCCTAGCTTTGCTCAGATGCTGAAAAAGAACTTGCCAGTTCAGACATCAGCCCA GACAGTAACTACACCCACAGGATATTCCTCGGAAAGTTACAGCATGTCGAACATGGCATC CAAGGTTACACAAGTGACGGGTAATTTTCCAGAACCATTGCTTTCCAAAGGTCTTTCATC GATTTCAAATCCTGTCCTTCCTCCGAAAAAAATACCAAAGGAATTTATAATGAAATACAA ACGTGGAGAGATAAATCCTGTATCAGCCTTGCACCAGTTTGCACAGATGCAGCGGGTTCA GCTTGACCTTAAGGAAACAGTAACAACAGGTAATGTTATGGGACCATATTTTGCTTTTTG TGCTGTGGTTGATGGAATTCAATACAAGACTGGACTGGGACAAAATAAAAAGGAGTCTAG ATCCAATGCAGCAAAATTAGCTCTTGATGAGCTTCTACAGTTGGATGAACCTGAACCAAG AATTTCAGAAACATCAGGTCCTCCTCCTATCCCTGCAGAACCTATTGTTTCACCTGAACC AGTATATGTTTCAAAAGTACATTATGGTAGGAAAGTCCTTTATGATAATTTTTAAAGAAG ATTAACCCAATTAAAAATAACAGCATATAATTAAAATATGCATAGGTATGAAAATATACC TTAGTATTTCATTATTCAAACCTGTCACACTTCTACAGAAATGAGTGTTTCCTTCCATAT ATGCTAAAAATTAGAGAAATAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr17 (20504384-20504245) | |
| 1-143, gnl|canFam2|chr19 (20835310-20834786) | |
| 1-143, gnl|echTel1|scaffold_309114 (9350-8923) | |
| 1-143, gnl|hg17|chr4 (123657940-123658422) | |
| 1-143, gnl|Hg17|chr4 (123658330-123658447) | |
| 1-143, gnl|loxAfr1|scaffold_69823 (6814-6353) | |
| 1-143, gnl|mm7|chr3 (36874023-36874596) | |
| 1-143, gnl|Mm7|chr3 (36874481-36874613) | |
| 1-143, gnl|monDom2|scaffold_32 (4838008-4837466) | |
| 1-143, gnl|oryCun1|scaffold_90046 (4877-4400) | |
| 1-143, gnl|panTro1|chr3 (140487819-140488301) | |
| 1-143, gnl|rheMac2|chr5 (114759768-114760254) | |
| 1-143, gnl|rn3|chr2 (123543694-123544201) | |
| 320-513, gnl|bosTau2|chr17 (20502991-20502798) | |
| 320-513, gnl|canFam2|chr23 (11968061-11968225) | |
| 320-513, gnl|dasNov1|scaffold_110911 (1868-1698) | |
| 320-513, gnl|hg17|chr3 (39302636-39302807) | |
| 320-513, gnl|Hg17|chr4 (123659751-123659944) | |
| 320-513, gnl|loxAfr1|scaffold_69823 (4663-4478) | |
| 320-513, gnl|mm7|chr3 (36875856-36876042) | |
| 320-513, gnl|Mm7|chr3 (36875850-36876043) | |
| 320-513, gnl|panTro1|chr2 (40416948-40417119) | |
| 320-513, gnl|rheMac2|chr2 (97237456-97237285) | |
| 320-513, gnl|rn3|chr2 (123545595-123545774) | |
| 675-924, gnl|bosTau2|chr17 (20496046-20495792) | |
| 675-924, gnl|Hg17|chr4 (123672346-123672598) | |
| 675-924, gnl|Mm7|chr3 (36880735-36880953) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr17 (20504384-20504245) | |
| 1-143, gnl|canFam2|chr19 (20835310-20834786) | |
| 1-143, gnl|echTel1|scaffold_309114 (9350-8923) | |
| 1-143, gnl|hg17|chr4 (123657940-123658422) | |
| 1-143, gnl|Hg17|chr4 (123658330-123658447) | |
| 1-143, gnl|loxAfr1|scaffold_69823 (6814-6353) | |
| 1-143, gnl|mm7|chr3 (36874023-36874596) | |
| 1-143, gnl|Mm7|chr3 (36874481-36874613) | |
| 1-143, gnl|monDom2|scaffold_32 (4838008-4837466) | |
| 1-143, gnl|oryCun1|scaffold_90046 (4877-4400) | |
| 1-143, gnl|panTro1|chr3 (140487819-140488301) | |
| 1-143, gnl|rheMac2|chr5 (114759768-114760254) | |
| 1-143, gnl|rn3|chr2 (123543694-123544201) | |
| 320-513, gnl|bosTau2|chr17 (20502991-20502798) | |
| 320-513, gnl|canFam2|chr23 (11968061-11968225) | |
| 320-513, gnl|dasNov1|scaffold_110911 (1868-1698) | |
| 320-513, gnl|hg17|chr3 (39302636-39302807) | |
| 320-513, gnl|Hg17|chr4 (123659751-123659944) | |
| 320-513, gnl|loxAfr1|scaffold_69823 (4663-4478) | |
| 320-513, gnl|mm7|chr3 (36875856-36876042) | |
| 320-513, gnl|Mm7|chr3 (36875850-36876043) | |
| 320-513, gnl|panTro1|chr2 (40416948-40417119) | |
| 320-513, gnl|rheMac2|chr2 (97237456-97237285) | |
| 320-513, gnl|rn3|chr2 (123545595-123545774) | |
| 675-924, gnl|bosTau2|chr17 (20496046-20495792) | |
| 675-924, gnl|Hg17|chr4 (123672346-123672598) | |
| 675-924, gnl|Mm7|chr3 (36880735-36880953) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.66251) | |
| cte (0.29274) |