Non-Coding RNA Search

Ss1.1-rtes09_f24.5

Sequence:


               
               CAGCGAGATCTAGGGACAGAGTCTCAGCCTCGCCGCTGCCGCCCAGAGACTGCTGAACCC
CGGTCCGTCCGCCGCCACCCACTCCGGACACAGAACATCCAGTCATGGATAAAAATGAGC
TGGTGCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGTA
TGAAGTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAG
TTGCTTATAAAAATGTTGTAGGAGCCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTG
AGCAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGAGAATACCGAGAGAAAA
TTGAGACCGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGA
TCCCCAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGACTACT
ACCGTTACTTGGCTGAGGTTGCTGCTGGTGATGATAAGAAAGGGATTGTGGATCAGTCAC
AGCAAGCATACCAGGAAGCTTTTGAAATCAGCAAAAAGGAAATGCAACCAACACATCCTA
TCAGATTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCCAG
AGAAAGCCTGCTCTCTTGCAAAGACAGCATTTGATGAAGCCATTGCTGAACTTGATACAT
TAAGTGAAGAGTCATACAAAGACAGCACGCTAATAATGCAATTACTGAGAGACAACTTGA
CATTGTGGACATCGGATACCCAAGGAGATGAAGCTGAAGCAGGAGAAGGAGGGGAAAATT
AACCGGCCTTCCAACTTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCA
TCCATGCTGTCCCACAAATAGTTTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCT
ATTTGAATTTCTATATTTCCCATGTGGTTTTTATGTTTAATATTAGGGGAGTAGAGCCAG
TTAACATTTAGGGAGTTATCTGTTTTCATCTTGAGGTGGCCAATATGGGGATGTGGAATT
TTTATACAAGTTATAAATGTTTGGCATAGTACTTTTGGTACATTGTGGCTTCACAAGGGC
CAGTGTTAAAATTGCTTCCATGTCTAAGCAAAGAAAACTGCCTACATATTGGTTTGTCCT
GGTGGGGAATAAAAGGGATAATTGGTTCCAGTCACACATGTAGTCGTGGGTACTTTAAGG
TTTGGAGCACTTACAAGGCGTAGTGGAAGTGGATATCCCGTGGATATTACATGTAAAATC
ATGTATTATCTGTGGGATACTCGGTCTCAATGTGCACACCTTTGACTACAGCTACGGAAG
TGTTCCTTGTAGTGGTGACCCAATTTACTCTGGATAAGGGCAGAAACGGTTCACATTCCA
TTATTTGTAAAGTTACCTGCTGTTTGCTTTCATTATTTTTGCTACACTCATTTTATTTGT
ATTTAAATGTTGTAGGCAACCTAAGAACAAATGTACAAGTAAAGATGCAGTAAAAATGAA
TTGCTTGATATCCATTACTTTCATGTATATCAAGCACAGCAGTAAAACAAAAAATCCATG
TATTTAACTTTTTTTTTAGTTTTTTTTTTTTTTTTGTTTGGTGATTTTTTTTTTTTTTTT
TTTTGGATACTTGCCTAACATGCATGTGCTGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGAGATCTAGGGACAGAGTCTCAGCCTCGCCGCTGCCGCCCAGAGACTGCTGAACCC
CGGTCCGTCCGCCGCCACCCACTCCGGACACAGAACATCCAGTCATGGATAAAAATGAGC
TGGTGCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGTA
TGAAGTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAG
TTGCTTATAAAAATGTTGTAGGAGCCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTG
AGCAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCTCGAGAATACCGAGAGAAAA
TTGAGACCGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTTGA
TCCCCAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGACTACT
ACCGTTACTTGGCTGAGGTTGCTGCTGGTGATGATAAGAAAGGGATTGTGGATCAGTCAC
AGCAAGCATACCAGGAAGCTTTTGAAATCAGCAAAAAGGAAATGCAACCAACACATCCTA
TCAGATTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCCAG
AGAAAGCCTGCTCTCTTGCAAAGACAGCATTTGATGAAGCCATTGCTGAACTTGATACAT
TAAGTGAAGAGTCATACAAAGACAGCACGCTAATAATGCAATTACTGAGAGACAACTTGA
CATTGTGGACATCGGATACCCAAGGAGATGAAGCTGAAGCAGGAGAAGGAGGGGAAAATT
AACCGGCCTTCCAACTTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCA
TCCATGCTGTCCCACAAATAGTTTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCT
ATTTGAATTTCTATATTTCCCATGTGGTTTTTATGTTTAATATTAGGGGAGTAGAGCCAG
TTAACATTTAGGGAGTTATCTGTTTTCATCTTGAGGTGGCCAATATGGGGATGTGGAATT
TTTATACAAGTTATAAATGTTTGGCATAGTACTTTTGGTACATTGTGGCTTCACAAGGGC
CAGTGTTAAAATTGCTTCCATGTCTAAGCAAAGAAAACTGCCTACATATTGGTTTGTCCT
GGTGGGGAATAAAAGGGATAATTGGTTCCAGTCACACATGTAGTCGTGGGTACTTTAAGG
TTTGGAGCACTTACAAGGCGTAGTGGAAGTGGATATCCCGTGGATATTACATGTAAAATC
ATGTATTATCTGTGGGATACTCGGTCTCAATGTGCACACCTTTGACTACAGCTACGGAAG
TGTTCCTTGTAGTGGTGACCCAATTTACTCTGGATAAGGGCAGAAACGGTTCACATTCCA
TTATTTGTAAAGTTACCTGCTGTTTGCTTTCATTATTTTTGCTACACTCATTTTATTTGT
ATTTAAATGTTGTAGGCAACCTAAGAACAAATGTACAAGTAAAGATGCAGTAAAAATGAA
TTGCTTGATATCCATTACTTTCATGTATATCAAGCACAGCAGTAAAACAAAAAATCCATG
TATTTAACTTTTTTTTTAGTTTTTTTTTTTTTTTTGTTTGGTGATTTTTTTTTTTTTTTT
TTTTGGATACTTGCCTAACATGCATGTGCTGTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R651_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R651_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               221-340, - strand, RNAz p=0.51648
               

               
               1277-1390, + strand, RNAz p=0.989212

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-340, - strand, RNAz p=0.51648
               

               
               1277-1390, + strand, RNAz p=0.989212

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               105-842, gnl|bosTau2|chr29 (23119159-23118428)
               

               
               105-842, gnl|Hg17|chr4 (165211283-165212011)
               

               
               105-842, gnl|Mm7|chr2 (66793817-66795327)
               


               
               117-728, gnl|bosTau2|chr10 (26944128-26944739)
               

               
               117-728, gnl|Hg17|chr2 (138880080-138879463)
               

               
               117-728, gnl|Mm7|chr11 (75833454-75840920)
               


               
               845-1656, gnl|bosTau2|chr16 (824570-823769)
               

               
               845-1656, gnl|Hg17|chr2 (127031275-127030409)
               

               
               845-1656, gnl|Mm7|chr3 (92796162-92797042)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-842, gnl|bosTau2|chr29 (23119159-23118428)
               

               
               105-842, gnl|Hg17|chr4 (165211283-165212011)
               

               
               105-842, gnl|Mm7|chr2 (66793817-66795327)
               


               
               117-728, gnl|bosTau2|chr10 (26944128-26944739)
               

               
               117-728, gnl|Hg17|chr2 (138880080-138879463)
               

               
               117-728, gnl|Mm7|chr11 (75833454-75840920)
               


               
               845-1656, gnl|bosTau2|chr16 (824570-823769)
               

               
               845-1656, gnl|Hg17|chr2 (127031275-127030409)
               

               
               845-1656, gnl|Mm7|chr3 (92796162-92797042)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               tes (1.03907)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               spl (0.572738)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               cbl (0.344392)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               spl (0.572738)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               ecc (0.345105)
               

               
               cbl (0.344392)
               

               
               csp (0.322373)
               

               
               lnt (0.284616)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	221-340, - strand, RNAz p=0.51648
	1277-1390, + strand, RNAz p=0.989212

	105-842, gnl\|bosTau2\|chr29 (23119159-23118428)
	105-842, gnl\|Hg17\|chr4 (165211283-165212011)
	105-842, gnl\|Mm7\|chr2 (66793817-66795327)

	117-728, gnl\|bosTau2\|chr10 (26944128-26944739)
	117-728, gnl\|Hg17\|chr2 (138880080-138879463)
	117-728, gnl\|Mm7\|chr11 (75833454-75840920)

	845-1656, gnl\|bosTau2\|chr16 (824570-823769)
	845-1656, gnl\|Hg17\|chr2 (127031275-127030409)
	845-1656, gnl\|Mm7\|chr3 (92796162-92797042)

	tes (1.03907)
	cte (0.58548)
	nlu (0.575043)
	spl (0.572738)
	ece (0.45861)
	ebs (0.354904)
	ecc (0.345105)
	cbl (0.344392)
	csp (0.322373)
	lnt (0.284616)
	cty (0.20816)
	col (0.195008)
	ton (0.1755)
	eye (0.170503)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	cbr (0.127975)
	thg (0.126791)
	eep (0.122564)
	jca (0.11396)