Non-Coding RNA Search

Ss1.1-rtes09_o12.5

Sequence:


               
               GTTCCAGAGACAAACAATATGAGTGCAGGAAAGCACGTCTGACCTGAGTGGAGGGCCTGT
ACTAAATTCAGAAGTTAAACTCGTTACTGTTTTTGGTGACCAGCCAGAAATTCCTTTAGG
CTATGAGTAGGCCTGAGACACATGATGGTGGGCTGCCTTGCCACTTCAAATCAGGCCAAA
ATGCACATCATAGCAAATTGTAAAGGACAGAATGCAGTTAGAGGTTTGAGGCAATTCATT
TGCCACGATTTTCATTAAAGCAAGAGCTCATCCCAAGACATTATGTAATGCCTTGGAAAG
AAAATATGAAATTCAGGAAGGTGAATCTGAAGCATGCGGAAGCATGTAGGATCCATGCCG
GCCCTTTAGAAGATACTCTGTTTTTGAATCACAGCGAAAGGCTTTGCCATGGGGAGGACC
GTAAAGTCGTCTTGAAGAAAGGCCCACCAGAAATAAAAATCGCAGATATGCCTTTGCATT
CACCTCTTTCCAGATACCAAAGCACTGTGATTTCCCTCGGCTTCAGGAGGCGACTGGTCT
GATGAAAGAATAAAACGATAAGAGTATTTCAGTCTCTCCCTCTCTCTCTCCCATAAATGT
TTAAGTCCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCAGAGACAAACAATATGAGTGCAGGAAAGCACGTCTGACCTGAGTGGAGGGCCTGT
ACTAAATTCAGAAGTTAAACTCGTTACTGTTTTTGGTGACCAGCCAGAAATTCCTTTAGG
CTATGAGTAGGCCTGAGACACATGATGGTGGGCTGCCTTGCCACTTCAAATCAGGCCAAA
ATGCACATCATAGCAAATTGTAAAGGACAGAATGCAGTTAGAGGTTTGAGGCAATTCATT
TGCCACGATTTTCATTAAAGCAAGAGCTCATCCCAAGACATTATGTAATGCCTTGGAAAG
AAAATATGAAATTCAGGAAGGTGAATCTGAAGCATGCGGAAGCATGTAGGATCCATGCCG
GCCCTTTAGAAGATACTCTGTTTTTGAATCACAGCGAAAGGCTTTGCCATGGGGAGGACC
GTAAAGTCGTCTTGAAGAAAGGCCCACCAGAAATAAAAATCGCAGATATGCCTTTGCATT
CACCTCTTTCCAGATACCAAAGCACTGTGATTTCCCTCGGCTTCAGGAGGCGACTGGTCT
GATGAAAGAATAAAACGATAAGAGTATTTCAGTCTCTCCCTCTCTCTCTCCCATAAATGT
TTAAGTCCTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46409440|ref|NP_997291.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46409440|ref|NP_997291.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-223, gnl|bosTau2|chr7 (23371751-23371534)
               

               
               1-223, gnl|canFam2|chr11 (18910361-18910613)
               

               
               1-223, gnl|dasNov1|scaffold_50158 (1422-1310)
               

               
               1-223, gnl|echTel1|scaffold_180782 (3915-3728)
               

               
               1-223, gnl|hg17|chr5 (125995447-125995709)
               

               
               1-223, gnl|Hg17|chr5 (125995527-125995932)
               

               
               1-223, gnl|loxAfr1|scaffold_25026 (885-1139)
               

               
               1-223, gnl|oryCun1|scaffold_212255 (3413-3208)
               

               
               1-223, gnl|panTro1|chr4 (132325106-132325368)
               

               
               1-223, gnl|rheMac2|chr6 (123026780-123027026)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr7 (23371751-23371534)
               

               
               1-223, gnl|canFam2|chr11 (18910361-18910613)
               

               
               1-223, gnl|dasNov1|scaffold_50158 (1422-1310)
               

               
               1-223, gnl|echTel1|scaffold_180782 (3915-3728)
               

               
               1-223, gnl|hg17|chr5 (125995447-125995709)
               

               
               1-223, gnl|Hg17|chr5 (125995527-125995932)
               

               
               1-223, gnl|loxAfr1|scaffold_25026 (885-1139)
               

               
               1-223, gnl|oryCun1|scaffold_212255 (3413-3208)
               

               
               1-223, gnl|panTro1|chr4 (132325106-132325368)
               

               
               1-223, gnl|rheMac2|chr6 (123026780-123027026)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-223, gnl\|bosTau2\|chr7 (23371751-23371534)
	1-223, gnl\|canFam2\|chr11 (18910361-18910613)
	1-223, gnl\|dasNov1\|scaffold_50158 (1422-1310)
	1-223, gnl\|echTel1\|scaffold_180782 (3915-3728)
	1-223, gnl\|hg17\|chr5 (125995447-125995709)
	1-223, gnl\|Hg17\|chr5 (125995527-125995932)
	1-223, gnl\|loxAfr1\|scaffold_25026 (885-1139)
	1-223, gnl\|oryCun1\|scaffold_212255 (3413-3208)
	1-223, gnl\|panTro1\|chr4 (132325106-132325368)
	1-223, gnl\|rheMac2\|chr6 (123026780-123027026)